Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001562095.1_202016-02-16] 31 sequences; 46,106,741 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq2 122 8e-23 seq12 93.3 4e-14 >seq2 Length=1585523 Score = 122 bits (134), Expect = 8e-23 Identities = 155/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 24705 TGCAGATCTTTATTAA-AACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||| | ||||| || || || || || ||||| || | | Sbjct 1022408 TGCAGATCTTTGTGAAGAACATTGACCGGAAAGACGATCACTCTTGAAGTCGAGTCTTCT 1022467 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||| || ||||||||||| || |||||||| ||| Sbjct 1022468 GACACTATCGACAATGTCAAGGCAAAGATTCAGGACAAAGAAGGCATTCCTCCCGACCAA 1022527 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || |||||||||||||| || || ||| |||||||| | | | || || |||||| Sbjct 1022528 CAGCGTTTGATCTTTGCTGGAAAGCAGTTGGAGGATGGTCGTACGCTTTCTGACTATAAC 1022587 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTGGTG 24913 ||||| || || || || || || ||||||| Sbjct 1022588 ATTCAGAAAGAGTCTACCCTTCATCTTGGTG 1022618 Score = 107 bits (118), Expect = 2e-18 Identities = 151/211 (72%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || ||||| || || || || | | Sbjct 171841 ATGCAGATCTTCGTCAAGACCCTCACAGGAAAGACGATTACTCTGGAGGTTGAGTCGTCG 171782 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | ||||| |||||||| ||||| ||||| || || || || ||| Sbjct 171781 GACACCATTGACAATGTAAAGGCGAAGATCCAGGACAAGGAAGGTATTCCGCCTGACCAA 171722 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| | || ||||| || || ||| |||||||| | | | || ||||| || Sbjct 171721 CAACGTCTCATTTTTGCTGGCAAGCAGTTGGAGGATGGTCGCACGCTTTCTGATTACAAT 171662 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTGGTG 24913 ||||| ||||| ||||| || || ||||||| Sbjct 171661 ATTCAGAAGGAGTCGACTCTTCACCTTGGTG 171631 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| |||| || || || || ||||| || || | || || || | | Sbjct 172297 ATGCAAATCTTTGTTAAGACCCTCACGGGCAAAACGATCACTTTGGAGGTCGAGTCTTCA 172238 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| || || || || || || |||||||||||| Sbjct 172237 GACACGATCGACAACGTGAAGGCCAAGATACAGGATAAGGAGGGCATTCCTCCCGATCAA 172178 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| | ||||| ||||| || ||||| || ||| | | | | || || || ||| Sbjct 172177 CAACGACTAATCTTCGCCGGCAAGCAGCTCGAAGATGGACGCACCCTTTCTGACTACAAC 172118 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| ||||| || || || ||| | || | || | || |||||| Sbjct 172117 ATTCAGAAGGAGTCAACCCTTCACCTTGTTCTTCGTCTACGTGGAGGC 172070 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/208 (70%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | ||||| || || || || | || || || | | Sbjct 1022181 ATGCAGATCTTTGTCAAGACTTTGACCGGAAAGACCATCACCTTGGAGGTCGAGTCGTCT 1022240 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || ||||||||| || || || || || ||||| || ||| Sbjct 1022241 GATACCATTGACAATGTGAAGGCAAAGATCCAGGATAAGGAGGGTATCCCTCCTGACCAA 1022300 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| | |||||||| || || ||||| || ||| | | | || |||||||| Sbjct 1022301 CAACGTCTTATCTTTGCTGGAAAGCAGCTAGAAGATGGCCGCACTCTTTCGGATTATAAT 1022360 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 || ||||| |||||||| || || |||| Sbjct 1022361 ATCCAAAAAGAATCGACTCTTCATCTTG 1022388 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || || || || || | | Sbjct 172069 ATGCAGATCTTCGTCAAGACACTCACGGGAAAGACGATCACTCTTGAGGTTGAGTCGTCT 172010 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || || | ||| | ||| ||||| ||||| ||||| || || || || || Sbjct 172009 GACACTATTGACAATGTTAAGGCGAAA-ATCCAGGACAAGGAAGGTATTCCGCCTGACCA 171951 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||||||| | || ||||| || || ||| |||||||| | | | || ||||| || Sbjct 171950 ACAACGTCTCATTTTTGCTGGCAAGCAGTTGGAGGATGGTCGCACGCTTTCTGATTACAA 171891 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| || || || || || ||| | || | || | || ||||| Sbjct 171890 TATTCAGAAAGAGTCAACCCTCCACCTTGTCCTTCGTCTTCGAGGAGG 171843 >seq12 Length=4000690 Score = 93.3 bits (102), Expect = 4e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 24809 ATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAAC 24868 || ||||| |||||||||||||||||||| ||||| || || || || ||| ||| Sbjct 1092277 ATTCCTCCTGATCAACAACGTTTGATCTTCGCCGGAAAGCAACTCGAAGATGGACGAACT 1092336 Query 24869 ATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTGGT 24912 | || || ||||||||||| ||||||||||| || |||||||| Sbjct 1092337 CTTTCCGACTATAACATTCAGAAGGAATCGACGCTCCACTTGGT 1092380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449897425664680