Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001562095.1_202016-02-16] 31 sequences; 46,106,741 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq2 129 5e-25 >seq2 Length=1585523 Score = 129 bits (142), Expect = 5e-25 Identities = 159/212 (75%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 29577 CACCAA-ATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCAT 29635 |||||| |||||| || || ||||| ||||||||||| || | || || ||| ||| | Sbjct 1022618 CACCAAGATGAAGGGTAGACTCTTTCTGAATGTTATAGTCAGAAAGCGTACGACCATCCT 1022559 Query 29636 CGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTT 29695 | | || || |||||| | ||||| | || || || || ||||| || |||||||| | Sbjct 1022558 CCAACTGCTTTCCAGCAAAGATCAAACGCTGTTGGTCGGGAGGAATGCCTTCTTTGTCCT 1022499 Query 29696 GTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTT 29754 | ||| |||| |||||| | || | |||||||||| || ||||||||||| || || Sbjct 1022498 G-AATCTTTGCCTTGACATTGTCGATAGTGTCAGAAGACTCGACTTCAAGAGTGATCGTC 1022440 Query 29755 TTGCCAGTTAAGGTT-TTAACAAATATCTGCA 29785 || || || || ||| || ||||| ||||||| Sbjct 1022439 TTTCCGGTCAATGTTCTTCACAAAGATCTGCA 1022408 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | | ||| || || | || || || || ||||| ||||| || ||||| | | Sbjct 171843 CCTCCTCGAAGACGAAGGACAAGGTGGAGGGTTGACTCTTTCTGAATATTGTAATCAGAA 171902 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || | || ||||||||| | || | | ||| || || |||||| Sbjct 171903 AGCGTGCGACCATCCTCCAACTGCTTGCCAGCAAAAATGAGACGTTGTTGGTCAGGCGGA 171962 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 ||||| || ||||| || | ||| || ||| | || | ||||||||| || || Sbjct 171963 ATACCTTCCTTGTCCTGGATTTTCGCCTTAACATTGTCAATAGTGTCAGACGACTCAACC 172022 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| || || || || || | || || || || |||||||| Sbjct 172023 TCAAGAGTGATCGTCTTTCCCGTGAGTGTCTTGACGAAGATCTGCAT 172069 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || || | |||||| || ||||||||||| || |||||||||| || ||||| ||| Sbjct 1022392 AGAACAAGATGAAGAGTCGATTCTTTTTGGATATTATAATCCGAAAGAGTGCGGCCATCT 1022333 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || || || || |||||| | || | | ||| || || || || |||||||| || || Sbjct 1022332 TCTAGCTGCTTTCCAGCAAAGATAAGACGTTGTTGGTCAGGAGGGATACCCTCCTTATCC 1022273 Query 29695 TGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTT 29754 || | ||| || ||| | || | || ||||| || || || | || || || Sbjct 1022272 TGGATCTTTGCCTTCACATTGTCAATGGTATCAGACGACTCGACCTCCAAGGTGATGGTC 1022213 Query 29755 TTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || || || || || || ||||| ||||||||| Sbjct 1022212 TTTCCGGTCAAAGTCTTGACAAAGATCTGCATT 1022180 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/211 (70%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 29577 CACCAAA-TGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCAT 29635 |||||| ||||| || || || || ||||| || ||||| | || |||||| ||| | Sbjct 171631 CACCAAGGTGAAGAGTCGACTCCTTCTGAATATTGTAATCAGAAAGCGTGCGACCATCCT 171690 Query 29636 CGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTT 29695 | | || ||||||||| | || | | ||| || || ||||||||||| || ||||| | Sbjct 171691 CCAACTGCTTGCCAGCAAAAATGAGACGTTGTTGGTCAGGCGGAATACCTTCCTTGTCCT 171750 Query 29696 GTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTT 29755 | | || || ||| | || | ||||| || || || || ||||| || || | Sbjct 171751 GGATCTTCGCCTTTACATTGTCAATGGTGTCCGACGACTCAACCTCCAGAGTAATCGTCT 171810 Query 29756 TGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || || | ||| || || || |||||||| Sbjct 171811 TTCCTGTGAGGGTCTTGACGAAGATCTGCAT 171841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385219054459371