Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001562095.1_202016-02-16] 31 sequences; 46,106,741 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq2 181 2e-40 seq16 84.2 4e-11 >seq2 Length=1585523 Score = 181 bits (200), Expect = 2e-40 Identities = 168/213 (79%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 ||||| | || ||||| |||||||| || ||||||||||| || ||| | | || ||| Sbjct 1022392 AGAACAAGATGAAGAGTCGATTCTTTTTGGATATTATAATCCGAAAGAGTGCGGCCATCT 1022333 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 ||||| || |||||||||||||| || | |||||| || ||||| || || |||||||| Sbjct 1022332 TCTAGCTGCTTTCCAGCAAAGATAAGACGTTGTTGGTCAGGAGGGATACCCTCCTTATCC 1022273 Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTC 82778 || |||||||| || ||||| ||||| |||||| | || || ||||| || || ||| Sbjct 1022272 TGGATCTTTGCCTTCACATTGTCAATGGTATCAGACGACTCGACCTCCAAGGTGATGGTC 1022213 Query 82779 TTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || || ||||| ||||| ||||| ||||||||| Sbjct 1022212 TTTCCGGTCAAAGTCTTGACAAAGATCTGCATT 1022180 Score = 141 bits (156), Expect = 2e-28 Identities = 154/203 (76%), Gaps = 1/203 (0%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || ||||| |||||||| || ||||| ||||| || | | ||| || || | || Sbjct 1022610 TGAAGGGTAGACTCTTTCTGAATGTTATAGTCAGAAAGCGTACGACCATCCTCCAACTGC 1022551 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 |||||||||||||| | | ||||| || ||||| || ||||| || || ||||||||| Sbjct 1022550 TTTCCAGCAAAGATCAAACGCTGTTGGTCGGGAGGAATGCCTTCTTTGTCCTGAATCTTT 1022491 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || || ||||| || || || ||| || || ||||| | ||| |||||||| || ||| Sbjct 1022490 GCCTTGACATTGTCGATAGTGTCAGAAGACTCGACTTCAAGAGTGATCGTCTTTCCGGTC 1022431 Query 82788 AACG-TCTTTACAAATATCTGCA 82809 || | |||| ||||| ||||||| Sbjct 1022430 AATGTTCTTCACAAAGATCTGCA 1022408 Score = 87.8 bits (96), Expect = 4e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| ||||| | || ||||||||||| ||||| || || || ||||| ||| | | ||| Sbjct 1022168 ACGAAGAACAAGATGAAGAGTAGATTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGACC 1022109 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTAT 82705 || || ||||| ||||| |||||||| | || |||||||| ||||| || Sbjct 1022108 ATCCTCGAGTTGCTTTCCGGCAAAGATCAATCGCTGTTGATCAGGAGGAAT 1022058 >seq16 Length=279175 Score = 84.2 bits (92), Expect = 4e-11 Identities = 87/113 (77%), Gaps = 1/113 (1%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 |||||| |||||||| || || ||||||||||| || || |||||| ||| | | || Sbjct 135724 ACGCAGCACTAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAATCACTCAGAGTACGTCC 135783 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTC 82707 || || ||||||||||| || || || |||| |||||||| || || |||| Sbjct 135784 ATCCTCAAGTTGTTTTCCGGCGAAAATGAGTCGCTGTTGATCAGG-GGAATTC 135835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981826810030509