Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001562095.1_202016-02-16] 31 sequences; 46,106,741 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq2 107 2e-18 >seq2 Length=1585523 Score = 107 bits (118), Expect = 2e-18 Identities = 147/203 (72%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||||||||| ||||||||||| | |||| ||| | ||||| | |||||||| Sbjct 171872 GGTTGACTCTTTCTGAATATTGTAATCAGAAAGCGTGCGACCA-TCCTCCAACTGCTTGC 171930 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || ||||||| || || ||||| || || || ||||||||||| ||| || || Sbjct 171931 CAGCAAAAATGAGACGTTGTTGGTCAGGCGGAATACCTTCCTTGTCCTGGATTTTCGCCT 171990 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | |||| ||||| | | ||| || || | |||| || || || || || | Sbjct 171991 TAACATTGTCAATAGTGTCAGACGACTCAACCTCAAGAGTGATCGTCTTTCCCGTGAGTG 172050 Query 133642 TTTTTACGAAAATCTGCATGGCT 133664 | || ||||| ||||||||| || Sbjct 172051 TCTTGACGAAGATCTGCATGCCT 172073 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| ||||||||||| | |||| ||| | ||||| | ||||||||| Sbjct 171645 GTCGACTCCTTCTGAATATTGTAATCAGAAAGCGTGCGACCA-TCCTCCAACTGCTTGCC 171703 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || ||||||| || || ||||| || || || ||||||||||| |||||| ||| Sbjct 171704 AGCAAAAATGAGACGTTGTTGGTCAGGCGGAATACCTTCCTTGTCCTGGATCTTCGCCTT 171763 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | |||| ||||| | | ||| || || | || | || || || || || || Sbjct 171764 TACATTGTCAATGGTGTCCGACGACTCAACCTCCAGAGTAATCGTCTTTCCTGTGAGGGT 171823 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 171824 CTTGACGAAGATCTGCAT 171841 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/203 (70%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||| ||||| || ||||| || | ||| | | | || ||||||||||||| Sbjct 172100 GGTTGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTGCGTCCA-TCTTCGAGCTGCTTGC 172158 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || || || || || |||||||| ||||| ||||| || ||||| || Sbjct 172159 CGGCGAAGATTAGTCGTTGTTGATCGGGAGGAATGCCCTCCTTATCCTGTATCTTGGCCT 172218 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | || | |||||| | | ||| || || | |||| |||||||| || || | Sbjct 172219 TCACGTTGTCGATCGTGTCTGAAGACTCGACCTCCAAAGTGATCGTTTTGCCCGTGAGGG 172278 Query 133642 TTTTTACGAAAATCTGCATGGCT 133664 | || || || || |||||| || Sbjct 172279 TCTTAACAAAGATTTGCATGCCT 172301 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/205 (70%), Gaps = 3/205 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| ||||||||||| || || || || | ||| ||| | ||||| | || Sbjct 1022611 ATGAAGGGTAGACTCTTTCTGAATGTTATAGTCAGAAAGCGTACGACCA-TCCTCCAACT 1022553 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 |||| || || | || | ||||| ||||||||||| |||||||| ||||| |||| Sbjct 1022552 GCTTTCCAGCAAAGATCAAACGCTGTTGGTCGGGAGGAATGCCTTCTTTGTCCTGAATCT 1022493 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 || ||||| | || | ||||| | | ||| || || | |||| || || |||| Sbjct 1022492 TTGCCTTGACATTGTCGATAGTGTCAGAAGACTCGACTTCAAGAGTGATCGTCTTTCCGG 1022433 Query 133636 TCAGAGTT-TTTACGAAAATCTGCA 133659 ||| ||| || || || ||||||| Sbjct 1022432 TCAATGTTCTTCACAAAGATCTGCA 1022408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483420612674440