Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001562095.1_202016-02-16] 31 sequences; 46,106,741 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq29 158 2e-32 seq23 134 2e-25 >seq29 Length=5849119 Score = 158 bits (174), Expect = 2e-32 Identities = 369/541 (68%), Gaps = 13/541 (2%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||||||| |||||||| || |||||||||||||| || ||||| || || ||| | || Sbjct 5168555 GATATGGCAAATGTAC-AAGAAGGCCGAGGCCTCTTTCTGGACTGCGGAAGAGATGGATT 5168613 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGT--CGC-TGAGCGACGACGAGCGCCATTTCATCA 1455891 | ||| ||||| ||| ||| ||| ||| || |||||| Sbjct 5168614 TATCAAAAGACCTTCATGACTGGAACAACCGCCTGAATGACAGCGAACGATTCTTCATCT 5168673 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 | |||||||| || ||| |||||| |||||||| || |||||| || || Sbjct 5168674 CCCGTGTCCTCGCGTTCTTT-GCCGCCTCTGATGGCATTGTCAACGAGAATCTTCTCGAA 5168732 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 ||||| ||| || || || | | |||||||||| || |||||||||||||| Sbjct 5168733 CGCTTCTCGAACGAAGTACAGGTCGCTGAGGCACGTTGCTTCTACGGGTTCCAGATTATG 5168792 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG 1456071 || || ||||| ||||| || || ||||| || || |||||||| ||| |||| ||||| Sbjct 5168793 ATGGAGAACATTCACTCCGAGACTTACTCTCTTCTCATCGACACATACATCAAAGACCCT 5168852 Query 1456072 GTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCC 1456131 ||||| || ||| ||| || ||||| || | || | | | | |||||| Sbjct 5168853 GTCGAACGTGATTTCCTTTTTGATGCTATCGAGACTATTCCTTGCATCAAGCGCAAGGCC 5168912 Query 1456132 GACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCG 1456191 || ||||| || | ||||||| | || |||| || | |||||| ||||| | Sbjct 5168913 GAGTGGGCTCTGCACTGGATCAGTGACGA-ACACTCG-GTTTTCGGCGAGCGTCTCGTAG 5168970 Query 1456192 GCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCG-CCATCTTTTGGCTC 1456249 |||||| || || || ||||| || ||||| ||| ||| ||| ||||||||||| | Sbjct 5168971 CCTTTGCTGCTGTTGAAGGCATTTTCTTCTCTGGCTCCTTC-GCGTCCATCTTTTGGATG 5169029 Query 1456250 AAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGC-AACGAATTTATCAGTCGCGACG 1456308 |||||||| || | ||||| || ||| || || | ||||| | |||||||| || | Sbjct 5169030 AAGAAGCGTGGATTAATGCCTGG-CTT-GGCGTTCTCAAACGAGCTCATCAGTCGTGATG 5169087 Query 1456309 A 1456309 | Sbjct 5169088 A 5169088 >seq23 Length=3600692 Score = 134 bits (148), Expect = 2e-25 Identities = 366/550 (67%), Gaps = 23/550 (4%) Strand=Plus/Minus Query 1455777 TATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTC 1455836 ||||| | |||||| | |||| | || || || || |||||| | || ||| | |||||| Sbjct 3499134 TATGGCAGATGTACAAGAAAG-CAGAAGCATCGTTCTGGACCTCGGAAGAGATTGACCTC 3499076 Query 1455837 GGCGCCGACACGGTCCACTGGGTGTCGC---TGAGCGACGACGAGCGCCATTTCATCAAG 1455893 || ||| ||||| || | | | | |||||||| |||||||||| Sbjct 3499075 ACTCATGATCTTGTCGACTGGAACGAGCGATTAAACAATGACGAGCGTCATTTCATCACC 3499016 Query 1455894 CACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCG 1455953 |||||||| || || ||| |||||| || || |||||| ||| || ||| | || Sbjct 3499015 CACGTCCTTGCATTCTTT-GCCGCCTCTGACGGTATCGTGAACGAAAATCTGTTGGAGCG 3498957 Query 1455954 CTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCAT 1456013 |||| || || || ||| | ||||| || | ||||| |||||||| || || Sbjct 3498956 CTTTTCAAACGAAGTGCAAGCAGCTGAGGCGCGCTACTTTTATGGGTTCCAAATAATGAT 3498897 Query 1456014 CGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGT 1456073 |||||| | || |||||||| ||||| || || ||||| || ||||||||||| | | Sbjct 3498896 GGAAAACGTTCATTCTGAAACTTACTCTCTGCTTATCGATACATACGTCAAGGATC--TT 3498839 Query 1456074 CGAGAAGGACCACCTCT-TTCG-CGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCC 1456131 || | || ||| |||| ||| || || || | |||| | | | || ||| Sbjct 3498838 AATCAACGCGCATATCTCTTCGACGCAATAGAAACAATACCGTGCATCAAGCGCAAAGCC 3498779 Query 1456132 GACTGGGCGATGAAGTGGA----TCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTC 1456187 |||||||| | || |||| | | || || | || ||||| ||| | | Sbjct 3498778 GACTGGGCCCTCAAATGGATATCTGACAAACGAAGCACT------TTTGCAGAGAGATTG 3498725 Query 1456188 GTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGG 1456246 || | || || || |||||||| |||||||| || || ||| |||| || ||| Sbjct 3498724 GTGGCATTCGCTGCTGTCGAGGGAATCTTTTTTTCTGGGTCGTTCGCTTCCATTTTCTGG 3498665 Query 1456247 CTCAAGAAGCGCGGCCTCATGCCCGGTCT-TCTGCTTTAGCAACGAATTTATCAGTCGCG 1456305 | |||||||||||||| ||||| || || || || | ||||| | ||||| || | Sbjct 3498664 TTAAAGAAGCGCGGCCTGATGCCTGGCCTAACTTATTCA--AACGAGCTCATCAGCCGAG 3498607 Query 1456306 ACGAAGTTTT 1456315 | |||| ||| Sbjct 3498606 ATGAAGGTTT 3498597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177808209993022