Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001562095.1_202016-02-16] 31 sequences; 46,106,741 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq29 179 5e-40 seq23 161 1e-34 seq31 122 1e-22 seq1 91.5 2e-13 >seq29 Length=5849119 Score = 179 bits (198), Expect = 5e-40 Identities = 378/562 (67%), Gaps = 14/562 (2%) Strand=Plus/Minus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||||||||| ||| | |||||||| | ||| || | ||||| || || | | Sbjct 5169113 GCAGGCGAAGTCGGTATGCATACCCTCATCACGACTGATGAGCTCGTTTGAGAACGCCAA 5169054 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAA 39735 |||||||||| |||||||| || | |||||| |||| || || || ||||| ||||| Sbjct 5169053 GCCAGGCATTAATCCACGCTTCTTCATCCAAAAGATGGACGCGAAGGAGCCAGAGAAGAA 5168994 Query 39736 GATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAA--CTTGT-ATCATTATG 39792 |||||||| || || ||||| || || || | ||| ||| || | || || | | Sbjct 5168993 AATGCCTTCAACAGCAGCAAAGGCTACGAGACGCTCGCCGAAAACCGAGTGTTCGTCACT 5168934 Query 39793 TATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 39852 ||||| | | | ||||| || || || ||| | ||||| || || || ||||||| Sbjct 5168933 GATCCAGTGCAGAGCCCACTCGGCCTTGCGCTTGATGCAAGGAATAGTCTCGATAGCATC 5168874 Query 39853 AAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACAT 39912 ||| || ||| ||| || ||||| | ||||| || || | ||| || | Sbjct 5168873 AAAAAGGAAATCACGTTCGACAGGGTCTTTGATGTATGTGTCGATGAGAAGAGAGTAAGT 5168814 Query 39913 TTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAAT 39972 || || || ||||| || ||| ||||| || ||||| || || | ||| |||| | Sbjct 5168813 CTCGGAGTGAATGTTCTCCATCATAATCTGGAACCCGTAGAAGCAACGTGCCTCAGCGAC 5168754 Query 39973 TTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGC 40032 ||||| || | || | ||| | ||| || || || || |||||| ||||| Sbjct 5168753 CTGTACTTCGTTCGAGAAGCGTTCGAGAAGATTCTCGTTGACAATGCCATCAGAGGCGGC 5168694 Query 40033 AAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAAT-------TTAT 40085 ||| || || | ||| | || || || ||| | ||||| | || | Sbjct 5168693 AAAGAACGCGAGGACACGGGAGATGAAGAATCGTTC----GCTGTCATTCAGGCGGTTGT 5168638 Query 40086 TCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTG 40145 ||||||||| | |||||||||| ||| | ||||| || ||||| || || ||||| | Sbjct 5168637 TCCAGTCATGAAGGTCTTTTGATAAATCCATCTCTTCCGCAGTCCAGAAAGAGGCCTCGG 5168578 Query 40146 CCTTTTTGTACATGTTCCATAT 40167 |||| |||||||| | |||||| Sbjct 5168577 CCTTCTTGTACATTTGCCATAT 5168556 >seq23 Length=3600692 Score = 161 bits (178), Expect = 1e-34 Identities = 370/556 (67%), Gaps = 6/556 (1%) Strand=Plus/Plus Query 39617 CAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGT 39676 || ||||| || ||||| || ||||||| || || | ||||| ||| | || || Sbjct 3498579 CACGCGAAATCGGTATGTAAACCTTCATCTCGGCTGATGAGCTCGTTTGAATAAGTTAGG 3498638 Query 39677 CCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAG 39736 |||||||| || || ||||| || | ||| || |||| ||| || || |||||||| ||| Sbjct 3498639 CCAGGCATCAGGCCGCGCTTCTTTAACCAGAAAATGGAAGCGAACGACCCAGAAAAAAAG 3498698 Query 39737 ATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAA---CTTGTATCATTATGT 39793 || || || || || || ||||| || | ||||||| | || ||| | | | | Sbjct 3498699 ATTCCCTCGACAGCAGCGAATGCCACCAATCTCTCTGCAAAAGTGCTTCGTTTGTCAGAT 3498758 Query 39794 ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 39853 ||||| || | ||||| || ||||| ||| | || || ||||||||||| || | Sbjct 3498759 ATCCATTTGAGGGCCCAGTCGGCTTTGCGCTTGATGCACGGTATTGTTTCTATTGCGTCG 3498818 Query 39854 AAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATT 39913 |||||||| || || | ||| || || |||||||| || | |||| || || Sbjct 3498819 AAGAGATATGCGCGTTGATTAAGATCCTTGACGTATGTATCGATAAGCAGAGAGTAAGTT 3498878 Query 39914 TCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATT 39973 || ||||| | |||||| ||| || || || || ||||| | | || |||| | Sbjct 3498879 TCAGAATGAACGTTTTCCATCATTATTTGGAACCCATAAAAGTAGCGCGCCTCAGCTGCT 3498938 Query 39974 TGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCA 40033 || || || |||| | ||| || |||||| ||||| || || ||| |||||| Sbjct 3498939 TGCACTTCGTTTGAAAAGCGCTCCAACAGATTTTCGTTCACGATACCGTCAGAGGCGGCA 3498998 Query 40034 AAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAAT---TTATTCCAG 40090 || ||||| | || || | || |||| || || | ||| | |||||| Sbjct 3498999 AAGAATGCAAGGACGTGGGTGATGAAATGACGCTCGTCATTGTTTAATCGCTCGTTCCAG 3499058 Query 40091 TCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTT 40150 || | ||| | | | || | ||||| | ||||| ||||| || ||||| || Sbjct 3499059 TCGACAAGATCATGAGTGAGGTCAATCTCTTCCGAGGTCCAGAACGATGCTTCTGCTTTC 3499118 Query 40151 TTGTACATGTTCCATA 40166 |||||||| | ||||| Sbjct 3499119 TTGTACATCTGCCATA 3499134 >seq31 Length=1678028 Score = 122 bits (134), Expect = 1e-22 Identities = 231/336 (69%), Gaps = 7/336 (2%) Strand=Plus/Plus Query 39638 CCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTT 39697 || || || | ||| || | |||||| ||||| || | ||||||| || ||||| ||| Sbjct 618637 CCTTCGTCACGACTGATAAGTTCGTTTGAAAAGGTCAACCCAGGCAATAATCCACGTTTT 618696 Query 39698 TTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAAT 39757 |||| |||||||||| || |||||||| || || || || ||||| | |||| ||| Sbjct 618697 TTGATCCAAAATATGCACGCGAAAGATCCGGAGAAAAAAATTCCTTCGATGGCTGAGAAT 618756 Query 39758 GCAACAAGTCTCTCTCC----GTAACTTGTATCATTATGTATCCACTTCTGTGCCCAATC 39813 ||||| |||| || | |||||||| ||| | | ||||| | ||||||| | Sbjct 618757 GCAACGAGTCGTTCCGCAAAAGTAACTTG-ATCGTCTTCGATCCATCTTAGTGCCCATGC 618815 Query 39814 AGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAATGTTT-TTCAT 39872 ||||| | || | ||||| || ||||| |||| | | || | | |||| | ||| Sbjct 618816 CGCTTTTTGTTTAATGCAAGGAATCGTTTCGATAGAACTGAACA-AGAATGATCGTTCGA 618874 Query 39873 CACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAA 39932 ||||| | ||| || | || | || | ||| ||||||||||||||||||| | Sbjct 618875 ATGGATCTTGGATATACGTTTGAATCAGCAAAGAATAAGTTTCTGAATGGATGTTTTCCA 618934 Query 39933 TCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAG 39968 || ||| ||||| || || ||| || |||| Sbjct 618935 TCATTGACTGGAATCCATAGAAGGATCGAGCCTCAG 618970 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/194 (70%), Gaps = 3/194 (2%) Strand=Plus/Plus Query 39341 ACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCCATGAAATCAAAC 39400 || || || || |||||||| ||||| ||||||| ||||| | |||||||||||||| Sbjct 618286 ACTCGCTTTTCAAAAAAATTTGTTTTTCCTTCCAGAGATATCATGTCCATGAAATCAAAA 618345 Query 39401 GGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATCAATCTATCTGCAACA 39460 || || | | || ||| ||| || || | | | || || || ||| |||| Sbjct 618346 GGGTTTCTGACGTTGTATAATTTGTTGTTCCCAAGTGCATTAAGCAGTCCATCCGCAATG 618405 Query 39461 AATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTAACTGGTAGAGCC 39520 || || |||||| | ||||| ||| ||||||||||||| | | |||||| | ||| Sbjct 618406 AACTCGATGTATATGCACATCAGCTCATAATTCATTCCTATCAAGTCAACTGGAATAGCA 618465 Query 39521 TCCGTTAGAAACTC 39534 || || |||||| Sbjct 618466 TC---TATAAACTC 618476 >seq1 Length=5311644 Score = 91.5 bits (100), Expect = 2e-13 Identities = 136/191 (71%), Gaps = 4/191 (2%) Strand=Plus/Minus Query 68402 TTGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAATGCATAC 68461 |||| | ||||| ||||| |||||||||| || |||||||| || |||||||||| Sbjct 5027701 TTGTCCTCAGATAATACATCCCGGTTTTCAAGCCCTTTCTCCATCCATAAAAATGCATAC 5027642 Query 68462 TTGTTAGTTTGGAATAAC--TTGGATCGGCTATATGAATATTCATCGATTGACTTTGATC 68519 ||||||| | || || |||| ||| | ||||||||||| |||||||| Sbjct 5027641 TTGTTAGCT--GACCCACAGATGGAGAGGCAAGATGAATATTCAAGCTCTGACTTTGGCA 5027584 Query 68520 GATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCCCAAAT 68579 ||| || || || | ||| | || | | | ||| | ||||||||||||||||||| Sbjct 5027583 GATAAACGCGCCACGATCCACGGCAAAATCCAAAATCGTTTTTTGAGGAATTTCCCAAAC 5027524 Query 68580 AGTCTTAAAAA 68590 || ||| ||| Sbjct 5027523 CGTTTTATAAA 5027513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686908533822840