Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001562095.1_202016-02-16] 31 sequences; 46,106,741 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq23 181 8e-41 seq9 178 1e-39 seq31 150 1e-31 seq29 150 1e-31 >seq23 Length=3600692 Score = 181 bits (200), Expect = 8e-41 Identities = 381/559 (68%), Gaps = 12/559 (2%) Strand=Plus/Minus Query 43731 TATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGA 43790 ||||||| |||||||| |||||| | || || || ||||| | ||||| |||| | | Sbjct 3499134 TATGGCAGATGTACAAGAAAGCAGAAGCATCGTTCTGGACCTCGGAAGAGATTGACCTCA 3499075 Query 43791 CTAAAGACTTAGCACATTGGATTGC---ATTAAAACCACAAGAAAAACATTTTATATCTT 43847 || | || | | | |||| | |||||| | || ||||| || | Sbjct 3499074 CTCATGATCTTGTCGACTGGAACGAGCGATTAAACAATGACGAGCGTCATTTCATCACCC 3499015 Query 43848 TGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGT 43907 || | || || ||||| || ||||| || || || |||||| || | || | Sbjct 3499014 ACGTCCTTGCATTCTTTGCCGCCTCTGACGGTATCGTGAACGAAAATCTGTTGGAGCGCT 3498955 Query 43908 TTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAG 43967 || | | ||||| ||| | | || || || | ||||||||||| ||||| || | Sbjct 3498954 TTTCAAACGAAGTGCAAGCAGCTGAGGCGCGCTACTTTTATGGGTTCCAAATAATGATGG 3498895 Query 43968 AAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCA-C 44026 |||| ||||||| |||| ||| ||| || || ||||| ||| |||| ||| | | Sbjct 3498894 AAAACGTTCATTCTGAAACTTACTCTCTGCTTATCGATACATACGTCAAGGATCTTAATC 3498835 Query 44027 GAGAAGCATCGAT-TGTTTAATGCGATAGAAACAGTACC-TGCGATTAAACATAAAGCAG 44084 | |||| || | || | || ||||||||| |||| ||| || || | ||||| | Sbjct 3498834 AACGCGCAT--ATCTCTTCGACGCAATAGAAACAATACCGTGC-ATCAAGCGCAAAGCCG 3498778 Query 44085 ACTGGGCCCTTAAATGGATAAATT-CAAATGATTC--TTTTGGAGAACGACTTGTCGCGT 44141 |||||||||| ||||||||| | |||| || | ||||| ||| || | || || | Sbjct 3498777 ACTGGGCCCTCAAATGGATATCTGACAAACGAAGCACTTTTGCAGAGAGATTGGTGGCAT 3498718 Query 44142 TTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGA 44201 | || | ||| || || || || ||||| || ||||| || |||| || |||||||||| Sbjct 3498717 TCGCTGCTGTCGAGGGAATCTTTTTTTCTGGGTCGTTCGCTTCCATTTTCTGGTTAAAGA 3498658 Query 44202 AACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCT 44261 | || || |||||||||| | || | |||||| ||| | || || || |||||||| | Sbjct 3498657 AGCGCGGCCTGATGCCTGGCCTAACTTATTCAAACGAGCTCATCAGCCGAGATGAAGGTT 3498598 Query 44262 TACATTGCGATTTTGCTTG 44280 ||||| |||||| || || Sbjct 3498597 TACATACCGATTTCGCGTG 3498579 >seq9 Length=652519 Score = 178 bits (196), Expect = 1e-39 Identities = 386/565 (68%), Gaps = 21/565 (4%) Strand=Plus/Plus Query 43730 ATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTG 43789 || ||| ||||||||||||||| ||| ||||||| |||||| | ||||| ||||| | Sbjct 464284 ATTTGGTCAATGTACAAAAAAGCTCAGTCGTCATTCTGGACATCGGAAGAGATTGATCTT 464343 Query 43790 ACTAAAGACTTAGCAC--ATTGGATTGCATTAAA----ACCACAA-GAAAAACATTTTAT 43842 | | || || ||| | |||| || ||| || || |||||| || | Sbjct 464344 TCAAGTGA--TATCACCGACTGGAA--CAACAAACTGAACGTTAATGAAAAATTCTTCCT 464399 Query 43843 ATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAG 43902 ||| || | ||||| ||||||||| || || || || || || ||| | || | Sbjct 464400 GTCTCGCGTCCTCGCGTTCTTTGCTGCGTCGGATGGTATTGTAAACGAGAATCTCATTCG 464459 Query 43903 TCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGC 43962 | ||| | | ||| | || | || || ||||| ||||| ||||| || || ||| Sbjct 464460 CCATTTTTCCAACGAAATACAGGTGCCGGAGGCACGGTGTTTCTATGGTTTCCAGATTAT 464519 Query 43963 CATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGG 44022 || |||||||||||||| |||| ||| | | || || | || || || |||| Sbjct 464520 GATGGAAAATATTCATTCTGAAACCTACTCTTTGCTTATTCAAACCTATATTCGAGAT-- 464577 Query 44023 GCACGAGAAGCATCGA--TTGTTTAATGCGATAGAAAC-AGTACCTGCGATTAAACATAA 44079 || | ||| |||| || || || | || ||||| | | | ||| |||||| || Sbjct 464578 GCTCCAGAGCGTTCGATGTTATTCAACTCTATTGAAACTATTCCGTGC-ATTAAAAGAAA 464636 Query 44080 AGCAGACTGGGCCCTTAAATGGA-TAAATTCAAATGATT--CTTTTGGAGAACGACTTGT 44136 |||| | ||||| ||| |||||| | || || |||| | |||| ||| || | || Sbjct 464637 AGCAAAATGGGCGCTTCAATGGATTCAAGATAATAGATTCACATTTGCAGAGCGTTTGGT 464696 Query 44137 CGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTT 44196 || ||||||| | |||||||| || ||||| | |||||||| |||||||||| | Sbjct 464697 AGCATTTGCAGCGATCGAAGGCATATTTTTTTCTGCGTCGTTTGCCTGCATATTTTGGAT 464756 Query 44197 AAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTC-GTGATG 44255 ||||| ||||| |||||||| || |||||||| |||||||| | || || | | |||| Sbjct 464757 GAAGAAGCGAGGGTTGATGCCGGGTTTGACGTTCTCAAATGAACTCATCAGCCGGCGATG 464816 Query 44256 AAGGCTTACATTGCGATTTTGCTTG 44280 |||| | ||| || ||||| || Sbjct 464817 AAGGAATGCATACTGAATTTGCATG 464841 >seq31 Length=1678028 Score = 150 bits (166), Expect = 1e-31 Identities = 297/433 (69%), Gaps = 11/433 (3%) Strand=Plus/Minus Query 43856 GCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAA 43915 || ||||| |||||| |||||| || || || ||||| ||| | ||| || | Sbjct 619043 GCATTTTTCGCTGCGTCCGACGGTATTGTAAACGAAAACTTGATCCGTCACTTCTCTAGT 618984 Query 43916 GAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAA--ATTGCCATAGAAAATA 43973 ||| |||| | | || || |||| || ||||| || || | || || ||||| | Sbjct 618983 GAAATTCAGGTCGCTGAGGCTCGATCCTTCTATGGATTCCAGTCAATG--ATGGAAAACA 618926 Query 43974 TTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGC 44033 | ||||| |||| || | | ||||| | ||||| ||| ||||| || ||| Sbjct 618925 TCCATTCAGAAACTTATTCTTTGCTGATTCAAACGTATATCCAAGATC--CATTCGAACG 618868 Query 44034 ATCGAT--TGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGC 44091 ||| | |||| | | | || ||||| | ||| |||||||| ||||| | ||||| Sbjct 618867 ATCATTCTTGTTCAGTTCTATCGAAACGATTCCTTGCATTAAACAAAAAGCGGCATGGGC 618808 Query 44092 CCTTAAATGGATA-AATTCAA--ATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGT 44148 || | |||||| || | | | | | |||||| |||||||| || || || ||| Sbjct 618807 ACTAAGATGGATCGAAGACGATCAAGTTACTTTTGCGGAACGACTCGTTGCATTCTCAGC 618748 Query 44149 TGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGG 44208 | ||||| ||||| || || ||||| || ||| |||||||||| | || ||||| || Sbjct 618747 CATCGAAGGAATTTTTTTCTCCGGATCTTTCGCGTGCATATTTTGGATCAAAAAACGTGG 618688 Query 44209 TTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTG 44268 || ||||||||||||| |||||||| || | || |||||||| ||||| | || Sbjct 618687 ATTATTGCCTGGGTTGACCTTTTCAAACGAACTTATCAGTCGTGACGAAGGAATGCACAC 618628 Query 44269 CGATTTTGCTTGC 44281 ||| ||||| ||| Sbjct 618627 CGACTTTGCATGC 618615 >seq29 Length=5849119 Score = 150 bits (166), Expect = 1e-31 Identities = 386/579 (67%), Gaps = 29/579 (5%) Strand=Plus/Plus Query 43720 ATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGA 43779 |||| || | ||||||||||||||||| || || |||| || || ||||| || ||||| Sbjct 5168547 ATAT-ATCAGATATGGCAAATGTACAAGAAGGCCGAGGCCTCTTTCTGGACTGCGGAAGA 5168605 Query 43780 AGTTGATTTGACTAAAGACTTAGCACATTGGATTGCATTAAAACCACAAGAAAAACA--- 43836 | ||||| | |||||| | ||| || || | | |||| | ||| ||| Sbjct 5168606 GATGGATTTATCAAAAGACCTT---CAT--GACTGGA--ACAACCGCCTGAATGACAGCG 5168658 Query 43837 -----TTTTATATCTTTGGTTT--TGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATG 43889 || | |||| || | | ||||| ||||| || || || || ||||| | Sbjct 5168659 AACGATTCTTCATCTCCCGTGTCCTCGCGTTCTTTGCCGCCTCTGATGGCATTGTCAACG 5168718 Query 43890 AAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATG 43949 | ||| | | || || || | ||||| || | | || ||||| || || || | Sbjct 5168719 AGAATCTTCTCGAACGCTTCTCGAACGAAGTACAGGTCGCTGAGGCACGTTGCTTCTACG 5168778 Query 43950 GGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGT 44009 |||| || ||| || || || ||||| || || | ||| |||||| || || || | Sbjct 5168779 GGTTCCAGATTATGATGGAGAACATTCACTCCGAGACTTACTCTCTTCTCATCGACACAT 5168838 Query 44010 ACATCAAAGA---TGG-GCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACCT 44065 |||||||||| || | ||| || || || || |||| || || || | ||| Sbjct 5168839 ACATCAAAGACCCTGTCGAACGTGATT--TCCTTT--TTGATGCTATCGAGACTATTCCT 5168894 Query 44066 GCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTC---TTTT 44122 || || | || || || ||||| || | ||||| | | | | || ||| Sbjct 5168895 TGCATCAAGCGCAAGGCCGAGTGGGCTCTGCACTGGATCAGTGACGAACACTCGGTTTTC 5168954 Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 || || || || || || ||||| | ||| |||||||||||||| || || || || ||| Sbjct 5168955 GGCGAGCGTCTCGTAGCCTTTGCTGCTGTTGAAGGCATTTTCTTCTCTGGCTCCTTCGCG 5169014 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 |||| |||||| | ||||| || || || |||||||| ||| |||| ||||| ||| | Sbjct 5169015 TCCATCTTTTGGATGAAGAAGCGTGGATTAATGCCTGGCTTGGCGTTCTCAAACGAGCTC 5169074 Query 44243 ATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGC 44281 || ||||||||||| || | ||| ||| || || ||| Sbjct 5169075 ATCAGTCGTGATGAGGGTATGCATACCGACTTCGCCTGC 5169113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397455849836155