Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001562095.1_202016-02-16] 31 sequences; 46,106,741 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq23 129 7e-25 seq29 87.8 2e-12 >seq23 Length=3600692 Score = 129 bits (142), Expect = 7e-25 Identities = 417/638 (65%), Gaps = 21/638 (3%) Strand=Plus/Minus Query 104965 TAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATT 105024 ||| |||||||| | || || ||||| |||||||| || || ||||| | |||| Sbjct 922547 TAACCAAAAGAACCTCGGAGTCATCAAATCATCCAATCTTTGCACTGAAATTGTCGAATA 922488 Query 105025 TACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGT 105084 | ||||| || ||||| ||||| || || || | ||||| || | || | Sbjct 922487 CTCTTCTCCGGATGAAACTGCTGTCTGTAATCTTGCTTCCCTTGCTCTTCCAACCTACAT 922428 Query 105085 ------GGATCCAGA-GACAAAGACATTT---GATTATGAAAAACTCCACGAAGTTACGA 105134 |||| || | |||| |||| |||| | |||||||| || ||||||| Sbjct 922427 AGTGAAGGATGCATCTGGCAAAC-CATTCTACGATTTCCAGAAACTCCATGATGTTACGA 922369 Query 105135 AAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGT---TGAGA 105191 |||| ||| | ||||| || | || |||||| | || | |||||| | |||| Sbjct 922368 AAACGGTCGCTTTCAACCTCAATCGCGTCATTGATCGCAACTACTACCCCATCCCTGAG- 922310 Query 105192 CTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGG 105251 || ||| |||||| ||| | ||||||| ||||| |||||||||| |||||||| | Sbjct 922309 --GCCCGTCGATCTAACATGCGTAACCGTCCCATTGGAATCGGTGTTCAAGGTCTCGCTG 922252 Query 105252 ATGTATTCAT-TCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCG 105310 | | ||||| | ||| | | | ||||| || |||||| |||||| |||| || Sbjct 922251 ACGCCTTCATGGCATTGAAGATGC-CTTTTGACTCGCCCGAAGCCAAGGAACTCAACACG 922193 Query 105311 CGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTT 105370 || || ||||| || || || | |||| ||||||||||| || |||| || Sbjct 922192 AAGATTTTCGAGACAATTTACCATGGCGCTTGTGAGGCGAGTTGCGAAATGGCGAAGACG 922133 Query 105371 GATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGAT 105430 ||||||||||| || || | |||| ||| ||| |||||| | || || ||| Sbjct 922132 GATGGTCCATACGAGACGTGGATGGGTAGTCCTGCTCAGCAAGGGCAATTGCAGTTCGAT 922073 Query 105431 ATGTGGGAAGGTGAGACCAAGC-TTCACTACGACTGGGAAGCTCTCAAGGAACGCATCAA 105489 | |||| || | ||| | | || || |||||| | | | ||||| |||| Sbjct 922072 CTATGGG-GTGTTACACCTACCGATCTCTGGGACTGGAATACGTTGAAGGAGAGCATTTC 922014 Query 105490 GGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACA 105549 || | || | | ||| || || | || |||||||| || ||||| || || Sbjct 922013 TAAGTATGGAATGAGGAACTCGCTGCTTACTGCACCAATGCCTACTGCCTCTACAAGTCA 921954 Query 105550 AATCTTGGGTAATAATGAATGCTTTGAACCCTACACGA 105587 || | || || ||||||||||| || ||||||| Sbjct 921953 GATGCTCGGCTTCAACGAATGCTTTGAGCCTTACACGA 921916 Score = 82.4 bits (90), Expect = 9e-11 Identities = 140/199 (70%), Gaps = 3/199 (2%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 ||||| | ||| ||||||| || || | || || || || || || || || |||| Sbjct 923454 CCACAACATATGATCATGCGGGTCGCTGTTGGGATACACGGAGACGATATCGAGCATGTC 923395 Query 104282 TTGGAGACATACGACAAGATGTCCCAAGG-TATGTTCATTCACGCAACACCAACCCTCTT 104340 ||| | |||||| || |||||| | | ||| |||| ||| || || || || ||||| Sbjct 923394 TTGCAAACATACAACCTCATGTCCGAGCGATAT-TTCACTCATGCCACTCCCACTCTCTT 923336 Query 104341 CAATGCTGGTACACC-AAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399 |||||| ||||| || || ||||||||| ||||||||| | || || || | Sbjct 923335 CAATGCCGGTACCCCTTTCGCCTCAAATGTCCTCATGCTTCCTTGTTTGCATGAAAGATG 923276 Query 104400 ACTCAATCAACGGTATCTA 104418 | || ||| | |||||||| Sbjct 923275 ATTCTATCGAAGGTATCTA 923257 >seq29 Length=5849119 Score = 87.8 bits (96), Expect = 2e-12 Identities = 164/230 (71%), Gaps = 12/230 (5%) Strand=Plus/Plus Query 94714 CTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAG-CGGATTGGGCTATGAA 94772 || ||||| || ||| | || |||| || || ||| | ||| | || |||||| || | Sbjct 5168868 CTTTTTGATGCTATCGAGACTATTCCTTGCAT-CAAGCGCAAGGCCGAGTGGGCTCTGCA 5168926 Query 94773 GTGGTT---TGATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGT 94829 ||| | ||| | | ||| ||| || | ||||| ||| | || ||||| ||| Sbjct 5168927 CTGGATCAGTGACGAACACTCG-GTT--TTCGGCGAGCGTCTCGTAGCCTTTGCTGCTGT 5168983 Query 94830 TGAGGGTATCTTCTTCTCTGGTTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTC 94888 ||| || || ||||||||||| |||||| ||| | || | |||| | |||||||| || Sbjct 5168984 TGAAGGCATTTTCTTCTCTGGCTCCTTC-GCGTCCATCTTTTGGATGAAGAAGCGTGGAT 5169042 Query 94889 TCATGCCAGGTCTCTGC-TTCTCCAACGAGCTTATCTCTCGTGACGAGGG 94937 | ||||| || || || ||||| |||||||| ||| |||||| ||||| Sbjct 5169043 TAATGCCTGG-CTTGGCGTTCTCAAACGAGCTCATCAGTCGTGATGAGGG 5169091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260573986440