Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001562095.1_202016-02-16] 31 sequences; 46,106,741 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq29 132 5e-26 seq23 82.4 8e-11 >seq29 Length=5849119 Score = 132 bits (146), Expect = 5e-26 Identities = 282/416 (68%), Gaps = 9/416 (2%) Strand=Plus/Minus Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828 || ||||| | || || | || || || |||| | ||||||||| | |||||||||| Sbjct 5169091 CCCTCATCACGACTGATGAGCTCGTTTGAGAACGCCAAGCCAGGCATTAATCCACGCTTC 5169032 Query 74829 TTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAG 74888 |||| ||||||||||| |||||| ||| |||||| |||||||| ||| |||||| Sbjct 5169031 TTCATCCAAAAGATGGACGCGAAGGAGCCAGAGAAGAAAATGCCTTCAACAGCAGCAAAG 5168972 Query 74889 GCGACAAGGCGTTGCGCGAA---CG-GTGCATCGGAAGTCATCCAAGTCTGAGCCCATTC 74944 || || || || | |||| || ||| ||| | | ||||| | ||||||| || Sbjct 5168971 GCTACGAGACGCTCGCCGAAAACCGAGTG-TTCGTCACTGATCCAGTGCAGAGCCCACTC 5168913 Query 74945 AGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTC 75004 || || || |||| ||| | ||| ||||| || | || ||| | || | Sbjct 5168912 GGCCTTGCGCTTGATGCAAGGAATAGTCTCGATAGCATCAAAAAGGAAATCACGTTCGAC 5168853 Query 75005 GGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTT 75064 || || |||| | |||| || | ||| ||||| ||||| || ||||| ||| | Sbjct 5168852 AGGGTCTTTGATGTATGTGTCGATGAGAAGAGAGTAAGTCTCGGAGTGAATGTTCTCCAT 5168793 Query 75065 GAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAA--A 75122 | |||| || ||||||| | || ||||| || | |||||| || || || || Sbjct 5168792 CATAATCTGGAACCCGTAGAAGCAACGTGCCTCAGCGACCTGTACTTCGTTCGAGAAGCG 5168733 Query 75123 TTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTAC 75178 ||| | | |||||| |||| ||||| || |||||||| || || || || || Sbjct 5168732 TTC--GAGAAGATTCTCGTTGACAATGCCATCAGAGGCGGCAAAGAACGCGAGGAC 5168679 >seq23 Length=3600692 Score = 82.4 bits (90), Expect = 8e-11 Identities = 284/439 (65%), Gaps = 7/439 (2%) Strand=Plus/Plus Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828 |||||||||| ||| || | || || ||| | | ||||||||||| || || |||||| Sbjct 3498600 CCTTCATCTCGGCTGATGAGCTCGTTTGAATAAGTTAGGCCAGGCATCAGGCCGCGCTTC 3498659 Query 74829 TTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAG 74888 || ||||| || |||| | ||| || ||| || ||||| || |||||| || || Sbjct 3498660 TTTAACCAGAAAATGGAAGCGAACGACCCAGAAAAAAAGATTCCCTCGACAGCAGCGAAT 3498719 Query 74889 GCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTC----ATCCAAGTCTGAGCCCATTC 74944 || || | | | || || |||| ||| ||| ||||| | | ||||| || Sbjct 3498720 GCCACCAATCTCTCTGC-AAAAGTGCTTCGTTTGTCAGATATCCATTTGAGGGCCCAGTC 3498778 Query 74945 AGCTTTTCGTTTGACCGCA-GGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTT 75003 ||||| || |||| ||| || | || || || || | |||||| ||| | | Sbjct 3498779 GGCTTTGCGCTTGA-TGCACGGTATTGTTTCTATTGCGTCGAAGAGATATGCGCGTTGAT 3498837 Query 75004 CGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGT 75063 ||||||||||| | || || | || ||||| || || ||||||| || Sbjct 3498838 TAAGATCCTTGACGTATGTATCGATAAGCAGAGAGTAAGTTTCAGAATGAACGTTTTCCA 3498897 Query 75064 TGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAAAT 75123 | | ||| || | || || | |||||||| || || || || |||||||| Sbjct 3498898 TCATTATTTGGAACCCATAAAAGTAGCGCGCCTCAGCTGCTTGCACTTCGTTTGAAAAGC 3498957 Query 75124 TCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTT 75183 | | ||| || | ||||| ||||| |||||||| || || || || || Sbjct 3498958 GCTCCAACAGATTTTCGTTCACGATACCGTCAGAGGCGGCAAAGAATGCAAGGACGTGGG 3499017 Query 75184 TGATAAAGTGGCGCTCATC 75202 |||| || || ||||| || Sbjct 3499018 TGATGAAATGACGCTCGTC 3499036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215787953800