Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001562095.1_202016-02-16] 31 sequences; 46,106,741 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq2 179 4e-40 seq23 93.3 5e-14 >seq2 Length=1585523 Score = 179 bits (198), Expect = 4e-40 Identities = 177/228 (78%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||||||||| | ||||| ||||| || || | ||||| ||||| Sbjct 1022180 AATGCAGATCTTTGTCAAGACTTTGACCGGAAAGACCATCACCTTGGAGGTCGAGTCGTC 1022239 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| ||||| ||| ||||||| || || ||||| |||||||| || ||||| ||||| Sbjct 1022240 TGATACCATTGACAATGTGAAGGCAAAGATCCAGGATAAGGAGGGTATCCCTCCTGACCA 1022299 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || ||||| || |||||||| ||||| || || |||| || || || | || ||||| Sbjct 1022300 ACAACGTCTTATCTTTGCTGGAAAGCAGCTAGAAGATGGCCGCACTCTTTCGGATTATAA 1022359 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||||| ||||| ||||||||||| || | | ||||| ||||| Sbjct 1022360 TATCCAAAAAGAATCGACTCTTCATCTTGTTCTCC--CTTCGTGGTGG 1022405 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || || ||||| || ||||||||||||||||| | Sbjct 172069 ATGCAGATCTTCGTCAAGACACTCACGGGAAAGACGATCACTCTTGAGGTTGAGTCGTCT 172010 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| | ||||| ||||| ||||||||||| || ||||| || ||||| Sbjct 172009 GACACTATTGACAATGTTAAGGCGAAAATCCAGGACAAGGAAGGTATTCCGCCTGACCAA 171950 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| ||||||||||| ||||| | ||||||| ||| || || | || || ||| Sbjct 171949 CAACGTCTCATTTTTGCTGGCAAGCAGTTGGAGGATGGTCGCACGCTTTCTGATTACAAT 171890 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || || || || || || || || ||| | |||||||| || || Sbjct 171889 ATTCAGAAAGAGTCAACCCTCCACCTTGTCCTTCGTCTTCGAGGAGG 171843 Score = 165 bits (182), Expect = 9e-36 Identities = 160/206 (78%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || || ||||| |||||||| ||||||||||| Sbjct 171841 ATGCAGATCTTCGTCAAGACCCTCACAGGAAAGACGATTACTCTGGAGGTTGAGTCGTCG 171782 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||| || || ||||||||||| || ||||| || ||||| Sbjct 171781 GACACCATTGACAATGTAAAGGCGAAGATCCAGGACAAGGAAGGTATTCCGCCTGACCAA 171722 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| ||||||||||| ||||| | ||||||| ||| || || | || || ||| Sbjct 171721 CAACGTCTCATTTTTGCTGGCAAGCAGTTGGAGGATGGTCGCACGCTTTCTGATTACAAT 171662 Query 27586 GTCCAAAAGGAATCCACTCTTCATCT 27611 | || ||||| || |||||||| || Sbjct 171661 ATTCAGAAGGAGTCGACTCTTCACCT 171636 Score = 147 bits (162), Expect = 2e-30 Identities = 157/206 (76%), Gaps = 1/206 (0%) Strand=Plus/Plus Query 27407 TGCAAATCTTTGTCAAGACGCTT-ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||| |||||||| |||| || ||||| ||||| || |||||||| || ||||| | Sbjct 1022408 TGCAGATCTTTGTGAAGAACATTGACCGGAAAGACGATCACTCTTGAAGTCGAGTCTTCT 1022467 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | ||||| || ||||||||||| || || |||||||| ||||| Sbjct 1022468 GACACTATCGACAATGTCAAGGCAAAGATTCAGGACAAAGAAGGCATTCCTCCCGACCAA 1022527 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | || |||||||| ||||| | ||||||| |||||| || | |||||||| Sbjct 1022528 CAGCGTTTGATCTTTGCTGGAAAGCAGTTGGAGGATGGTCGTACGCTTTCTGACTATAAC 1022587 Query 27586 GTCCAAAAGGAATCCACTCTTCATCT 27611 | || || || || || |||||||| Sbjct 1022588 ATTCAGAAAGAGTCTACCCTTCATCT 1022613 Score = 140 bits (154), Expect = 4e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||| ||||| || || ||||| || || ||| | ||||| ||||| Sbjct 172297 ATGCAAATCTTTGTTAAGACCCTCACGGGCAAAACGATCACTTTGGAGGTCGAGTCTTCA 172238 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || ||||||| || || ||||| |||||||| |||||||| || || Sbjct 172237 GACACGATCGACAACGTGAAGGCCAAGATACAGGATAAGGAGGGCATTCCTCCCGATCAA 172178 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || || ||||| || || || ||||| ||||| |||| || ||||| | ||||| || Sbjct 172177 CAACGACTAATCTTCGCCGGCAAGCAGCTCGAAGATGGACGCACCCTTTCTGACTACAAC 172118 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || || ||||| || || | ||||| || || || Sbjct 172117 ATTCAGAAGGAGTCAACCCTTCACCTTGTTCTTCGTCTACGTGGAGG 172071 Score = 105 bits (116), Expect = 8e-18 Identities = 97/123 (79%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 27511 ATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACC 27570 |||||||| || || ||||| | || ||||| || |||||||||||||||| ||| || Sbjct 1022058 ATTCCTCCTGATCAACAGCGATTGATCTTTGCCGGAAAGCAACTCGAGGATGGTCGCACT 1022117 Query 27571 CTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGT 27630 || | ||||| || | || |||||||| ||||||||||| || | |||||||| ||| Sbjct 1022118 CTTTCTGACTACAACATTCAGAAGGAATCTACTCTTCATCTTGTTCTTCGTCTTCGTGGT 1022177 Query 27631 GGA 27633 ||| Sbjct 1022178 GGA 1022180 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/122 (77%), Gaps = 3/122 (2%) Strand=Plus/Minus Query 27511 ATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACC 27570 |||||||||||||| || ||| | |||| ||||| |||||||| ||||| || || || Sbjct 172700 ATTCCTCCAGACCAACAACGT-TTGTTTTCGCTGGAAAGCAACTTGAGGACGA-CG-ACT 172644 Query 27571 CTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGT 27630 || | || || || ||||||| || ||||| || || |||||| | |||||||| || Sbjct 172643 CTCTCGGATTACAACATCCAAAAAGAGTCCACCCTCCACCTAGTCCTTCGTCTTCGTGGC 172584 Query 27631 GG 27632 || Sbjct 172583 GG 172582 Score = 82.4 bits (90), Expect = 9e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || ||||| || ||||| || ||||||||||| ||||||||||| || Sbjct 1021891 AATGCAAATATTCGTCAAAACTCTTACTGGGAAGACTATTACCCTTGAGGTTGAATCTTC 1021950 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 ||| | |||| ||| | || || || || || |||||||| || Sbjct 1021951 TGACACTATTGACAATGTCAAAGCCAAGATCCAAGACAAGGAAGG 1021995 >seq23 Length=3600692 Score = 93.3 bits (102), Expect = 5e-14 Identities = 212/318 (67%), Gaps = 21/318 (7%) Strand=Plus/Plus Query 80715 CATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGA 80774 |||||| ||||||| || || ||||| ||||| | || || |||| ||| |||| || Sbjct 922241 CATGAAGGCGTCAGCGAGACCTTGAACACCGATTCCAATGGGACGGTTACGCATGTTAGA 922300 Query 80775 TCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGT 80834 ||| |||||| || || ||||| |||| ||| |||||||| || |||||| | Sbjct 922301 TCGACGGGCCTCAGGGATGGGGTAGTAGTTGCGATCAATGACGCGATTGAGGTTGAAAG- 922359 Query 80835 AACAACCCGT---GTAACATCATGAAGTTTCTGAAA---GTCGAATTGGTTCC------- 80881 | ||| | ||||||||||| |||||||| || || |||| | || | Sbjct 922360 --CGACCGTTTTCGTAACATCATGGAGTTTCTGGAAATCGTAGAATGGTTTGCCAGATGC 922417 Query 80882 --CCTTCACAA---ATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTC 80936 ||||||| | | | ||||| ||||| || ||||| || || || || || Sbjct 922418 ATCCTTCACTATGTAGGTTGGAAGAGCAAGGGAAGCAAGATTACAGACAGCAGTTTCATC 922477 Query 80937 AGCATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTT 80996 | | | | ||||| ||||| ||||| | ||| || || || || || ||||| Sbjct 922478 CGGAGAAGAGTATTCGACAATTTCAGTGCAAAGATTGGATGATTTGATGACTCCGAGGTT 922537 Query 80997 TTTCTGGTTTGACTTGGC 81014 || ||||| || ||||| Sbjct 922538 CTTTTGGTTAGATTTGGC 922555 Score = 89.7 bits (98), Expect = 6e-13 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 64737 TGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAAAAGCGGGG 64796 ||| || ||||| || ||||||||||| ||| ||| ||||||||| |||| ||||| || Sbjct 3498710 TGTCGAGGGAATCTTTTTTTCTGGGTCGTTCGCTTCCATTTTCTGGTTAAAGAAGCGCGG 3498651 Query 64797 CCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATC 64833 ||||||||| || || | | ||| |||||||| ||| Sbjct 3498650 CCTGATGCCTGGCCTAACTTATTCAAACGAGCTCATC 3498614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570310179004720