Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001562095.1_202016-02-16] 31 sequences; 46,106,741 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq2 129 4e-25 >seq2 Length=1585523 Score = 129 bits (142), Expect = 4e-25 Identities = 149/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || ||||||||||| ||||||||||| || ||||| || | Sbjct 172069 ATGCAGATCTTCGTCAAGACACTCACGGGAAAGACGATCACTCTTGAGGTTGAGTCGTCT 172010 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| ||| |||| | ||||| ||||| |||||| | ||||| || || Sbjct 172009 GACACTATTGACAATGTTAAGGC-GAAAATCCAGGACAAGGAAGGTATTCCGCCTGACCA 171951 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||| | || ||||| ||||| || |||| || | ||||| | |||||||| Sbjct 171950 ACAACGTCTCATTTTTGCTGGCAAGCAGTTGGAGGATGGTCGCACGCTTTCTGATTACAA 171891 Query 23790 CATACAAAAAGAGTCCAC 23807 || || |||||||| || Sbjct 171890 TATTCAGAAAGAGTCAAC 171873 Score = 95.1 bits (104), Expect = 8e-15 Identities = 142/198 (72%), Gaps = 3/198 (2%) Strand=Plus/Plus Query 23612 TGCAGATTTTCGTTAA-AACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||| || || || ||| | || ||||| ||||||||||| ||||| || || | Sbjct 1022408 TGCAGATCTTTGTGAAGAACATTGACCGGAAAGACGATCACTCTTGAAGTCGAGTCTTCT 1022467 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| | || ||| | || | ||| ||| ||||||||||| | || || || || Sbjct 1022468 GACACTATCGACAATGTCAAGGC-AAAGATTCAGGACAAAGAAGGCATTCCTCCCGACCA 1022526 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||||| || ||||| || || || |||| || | || || | || || || Sbjct 1022527 ACAGCGTTTGATCTTTGCTGGAAAGCAGTTGGAGGATGGTCGTACGCTTTCTGACTATAA 1022586 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || |||||||| || Sbjct 1022587 CATTCAGAAAGAGTCTAC 1022604 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || ||||| ||||||||||| |||||||||||| | || || || || | Sbjct 172297 ATGCAAATCTTTGTTAAGACCCTCACGGGCAAAACGATCACTTTGGAGGTCGAGTCTTCA 172238 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || || || || || | || || |||||| Sbjct 172237 GACACGATCGACAACGTGAAGGCCAAGATACAGGATAAGGAGGGCATTCCTCCCGATCAA 172178 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || || |||| || |||||||| || || ||||| | |||||| | || |||||| Sbjct 172177 CAACGACTAATCTTCGCCGGCAAGCAGCTCGAAGATGGACGCACCCTTTCTGACTACAAC 172118 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 172117 ATTCAGAAGGAGTCAAC 172101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338009472295748