Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001562095.1_202016-02-16] 31 sequences; 46,106,741 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq2 172 1e-37 >seq2 Length=1585523 Score = 172 bits (190), Expect = 1e-37 Identities = 166/213 (78%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || ||||| || ||||| ||||||||||||| ||| ||||| | | ||| | |||||| Sbjct 1022392 AGAACAAGATGAAGAGTCGATTCTTTTTGGATATTATAATCCGAAAGAGTGCGGCCATCT 1022333 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 ||||||||||| ||||| |||||||| ||||||||||| || || ||||| ||||| || Sbjct 1022332 TCTAGCTGCTTTCCAGCAAAGATAAGACGTTGTTGGTCAGGAGGGATACCCTCCTTATCC 1022273 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||||||| ||||||| || ||||| || || | || || || || ||||| ||| Sbjct 1022272 TGGATCTTTGCCTTCACATTGTCAATGGTATCAGACGACTCGACCTCCAAGGTGATGGTC 1022213 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || |||||||| || | || | |||||| Sbjct 1022212 TTTCCGGTCAAAGTCTTGACAAAGATCTGCATT 1022180 Score = 147 bits (162), Expect = 5e-30 Identities = 165/221 (75%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | |||||||||||||| || || ||||| || | ||||||||| | | || Sbjct 171849 CGAAGACGAAGGACAAGGTGGAGGGTTGACTCTTTCTGAATATTGTAATCAGAAAGCGTG 171908 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||||| || | |||||| ||||| || || || ||||||||||| |||||||||||| Sbjct 171909 CGACCATCCTCCAACTGCTTGCCAGCAAAAATGAGACGTTGTTGGTCAGGCGGAATACCT 171968 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| ||||| || ||| ||| || || ||||| || | || || || | Sbjct 171969 TCCTTGTCCTGGATTTTCGCCTTAACATTGTCAATAGTGTCAGACGACTCAACCTCAAGA 172028 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||||||||| ||||| | || || | ||| | ||||| Sbjct 172029 GTGATCGTCTTTCCCGTGAGTGTCTTGACGAAGATCTGCAT 172069 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || |||||||| || || || || || || | ||||| || | | || | |||||| Sbjct 172086 AGAACAAGGTGAAGGGTTGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTGCGTCCATCT 172145 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| ||||||||||| ||||| ||||| || ||||| || Sbjct 172146 TCGAGCTGCTTGCCGGCGAAGATTAGTCGTTGTTGATCGGGAGGAATGCCCTCCTTATCC 172205 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| |||||| ||||| |||||||| | || || || || |||||||| Sbjct 172206 TGTATCTTGGCCTTCACGTTGTCGATCGTGTCTGAAGACTCGACCTCCAAAGTGATCGTT 172265 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||||| | || || | || | |||||| Sbjct 172266 TTGCCCGTGAGGGTCTTAACAAAGATTTGCAT 172297 Score = 132 bits (146), Expect = 1e-25 Identities = 154/208 (74%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 225506 CAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTA 225565 ||||||| ||||| || || || || | ||||||||| | | || | ||||| || | Sbjct 171634 CAAGGTGAAGAGTCGACTCCTTCTGAATATTGTAATCAGAAAGCGTGCGACCATCCTCCA 171693 Query 225566 GCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGA 225625 |||||| ||||| || || || ||||||||||| |||||||||||||||||||| |||| Sbjct 171694 ACTGCTTGCCAGCAAAAATGAGACGTTGTTGGTCAGGCGGAATACCTTCCTTGTCCTGGA 171753 Query 225626 TCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGC 225685 |||| ||| ||| || |||||||| || | || || || | || |||||||| | Sbjct 171754 TCTTCGCCTTTACATTGTCAATGGTGTCCGACGACTCAACCTCCAGAGTAATCGTCTTTC 171813 Query 225686 CCGTCAAAGTTTTTATGAACACTTGCAT 225713 | || | || || | ||| | ||||| Sbjct 171814 CTGTGAGGGTCTTGACGAAGATCTGCAT 171841 Score = 116 bits (128), Expect = 9e-21 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 225489 CTAACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAA 225548 |||| |||| |||| |||| || || || || ||||| || | || || || | | Sbjct 1022630 CTAAAGAAGACTCAC--CAAGATGAAGGGTAGACTCTTTCTGAATGTTATAGTCAGAAAG 1022573 Query 225549 AGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAAT 225608 || | ||||| || | |||||| ||||| ||||| | || ||||||||||| ||||| Sbjct 1022572 CGTACGACCATCCTCCAACTGCTTTCCAGCAAAGATCAAACGCTGTTGGTCGGGAGGAAT 1022513 Query 225609 ACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTC 225668 ||||| ||||| || |||||| ||| ||| ||||| ||||| || | || || || Sbjct 1022512 GCCTTCTTTGTCCTGAATCTTTGCCTTGACATTGTCGATAGTGTCAGAAGACTCGACTTC 1022453 Query 225669 TAACGTGATCGTCTTGCCCGTCAAAGTTTTT 225699 | ||||||||||| || ||||| ||| || Sbjct 1022452 AAGAGTGATCGTCTTTCCGGTCAATGTTCTT 1022422 Score = 100 bits (110), Expect = 7e-16 Identities = 87/107 (81%), Gaps = 1/107 (1%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 |||||||||||||| |||||||| || || | ||||| |||| || |||| |||||| Sbjct 172314 AGGACAAGGTGGAGTGTGGATTCCTTCTGAATGTTGTAGTCGGA-AAGGTTCGACCATCT 172372 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAAT 225608 || ||||||||||| || || ||||| ||||||||||| || || || Sbjct 172373 TCGAGCTGCTTCCCCGCAAATATAAGACGTTGTTGGTCAGGTGGGAT 172419 Score = 84.2 bits (92), Expect = 5e-11 Identities = 90/117 (77%), Gaps = 3/117 (3%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||||| |||||||| ||||| |||||||||| |||||||| | | ||| Sbjct 172587 ACGAAGACGAAGGACTAGGTGGAGGGTGGACTCTTTTTGGATGTTGTAATCCGAGAGAGT 172646 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAAT 225608 || || || || ||||| |||||||| | || ||||||||||| || ||||| Sbjct 172647 CGTCG--TCCTCAAGTTGCTTTCCAGCGAAAACAAA-CGTTGTTGGTCTGGAGGAAT 172700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192530726341514