Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001562095.1_202016-02-16] 31 sequences; 46,106,741 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq29 168 9e-37 seq31 127 3e-24 seq23 111 2e-19 seq1 84.2 3e-11 >seq29 Length=5849119 Score = 168 bits (186), Expect = 9e-37 Identities = 364/543 (67%), Gaps = 6/543 (1%) Strand=Plus/Minus Query 48155 ATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCC 48214 ||| | ||| ||||| | ||| || | ||||| || || | | || ||||||| ||| Sbjct 5169098 ATGCATACCCTCATCACGACTGATGAGCTCGTTTGAGAACGCCAAGCCAGGCATTAATCC 5169039 Query 48215 ACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGC 48274 ||| || || | |||||| || | |||||| || ||||| ||||| |||||||| || || Sbjct 5169038 ACGCTTCTTCATCCAAAAGATGGACGCGAAGGAGCCAGAGAAGAAAATGCCTTCAACAGC 5168979 Query 48275 CGCAAATGCGGTAAGTCTCTCTCCGTAACTGGC---TTCGTTGTGTATCCACCGTTGTGC 48331 ||||| || || | ||| ||| || | ||||| ||||| | | || Sbjct 5168978 AGCAAAGGCTACGAGACGCTCGCCGAAAACCGAGTGTTCGTCACTGATCCAGTGCAGAGC 5168919 Query 48332 CCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGttttt 48391 ||| || ||||| ||| | ||||| || || || ||||||| ||| || || | Sbjct 5168918 CCACTCGGCCTTGCGCTTGATGCAAGGAATAGTCTCGATAGCATCAAAAAGGAAATCACG 5168859 Query 48392 ttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATT 48451 ||| ||||| | ||| || || || | |||| || | ||||||||||| || Sbjct 5168858 TTCGACAGGGTCTTTGATGTATGTGTCGATGAGAAGAGAGTAAGTCTCGGAGTGAATGTT 5168799 Query 48452 TTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACA 48511 || || ||||| || ||||| || || | || || | || |||||| || | | Sbjct 5168798 CTCCATCATAATCTGGAACCCGTAGAAGCAACGTGCCTCAGCGACCTGTACTTCGTTCGA 5168739 Query 48512 AAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATAC 48571 || ||||| | |||||| || || || |||||| || ||||| || || | || Sbjct 5168738 GAAGCGTTCGAGAAGATTCTCGTTGACAATGCCATCAGAGGCGGCAAAGAACGCGAGGAC 5168679 Query 48572 ATGTTTAATAAAATATTTTTCGTTGGAAGTCA---GTTTATTCCAGTCATTGATATCTTT 48628 | | || || || |||| || | ||| | || |||||||||| | ||||| Sbjct 5168678 ACGGGAGATGAAGAATCGTTCGCTGTCATTCAGGCGGTTGTTCCAGTCATGAAGGTCTTT 5168619 Query 48629 TGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCA 48688 ||||| ||| | ||||| || ||||| || || ||||| || || || ||||| | ||| Sbjct 5168618 TGATAAATCCATCTCTTCCGCAGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATTTGCCA 5168559 Query 48689 TAT 48691 ||| Sbjct 5168558 TAT 5168556 >seq31 Length=1678028 Score = 127 bits (140), Expect = 3e-24 Identities = 365/553 (66%), Gaps = 20/553 (4%) Strand=Plus/Plus Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200 |||||||| || || | ||||| || | ||| || | |||||| ||||| || | Sbjct 618616 CATGCAAAGTCGGTGTGCATTCCTTCGTCACGACTGATAAGTTCGTTTGAAAAGGTCAAC 618675 Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAAT 48260 || |||| || |||||||||||||| ||||||||| |||||||||||| || || || Sbjct 618676 CCAGGCAATAATCCACGTTTTTTGATCCAAAATATGCACGCGAAAGATCCGGAGAAAAAA 618735 Query 48261 ATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCC----GTAACTGGCTTCGTTGTG 48316 || ||||| | ||| | ||||| |||| || | |||||| | |||| | Sbjct 618736 ATTCCTTCGATGGCTGAGAATGCAACGAGTCGTTCCGCAAAAGTAACTTG-ATCGTCTTC 618794 Query 48317 TATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCA-T 48375 ||||| | | ||||||| | || || | || | ||||| || ||||| |||| | | Sbjct 618795 GATCCATCTTAGTGCCCATGCCGCTTTTTGTTTAATGCAAGGAATCGTTTCGATAGAACT 618854 Query 48376 TAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTA--AAAGACTATA 48433 || |||| | | || | || ||||| | || || | || | ||||| ||| Sbjct 618855 GAACAAGAATGATCGTTCGAATG-GATCTTGGATATACGTTTGAATCAGCAAAGA--ATA 618911 Query 48434 CATTTCGGAGTGAATATTTTCAATTGCCAT---CTGAAATCCGTAAAAACATCTCGCTTC 48490 |||| || || || ||||| || ||| ||| ||||| || || ||| || || Sbjct 618912 AGTTTCTGAATGGATGTTTTCCAT---CATTGACTGGAATCCATAGAAGGATCGAGCCTC 618968 Query 48491 TGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACT 48550 | || ||| | || || | || | ||| || || ||||| || || || Sbjct 618969 AGCGACCTGAATTTCACTAGAGAAGTGACGGATCAAGTTTTCGTTTACAATACCGTCGGA 619028 Query 48551 AGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCA---GTTT 48607 ||||| |||||||||| ||| | | ||| | ||||| | ||| | || Sbjct 619029 CGCAGCGAAAAATGCTAGCACACGAGCCGTGAAAAAGCGCTCGTTTGCGTTCATGCGGTT 619088 Query 48608 ATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTC 48667 |||||||| | | ||| ||||| | |||| |||||| | ||||| || || ||||| Sbjct 619089 GTTCCAGTCGTGCAAATCGTTTGAAAGGTCTATTTCTTCCGTAGTCCAGAAGGAAGCCTC 619148 Query 48668 TGCTTTTTTATAC 48680 |||||||| ||| Sbjct 619149 AGCTTTTTTGTAC 619161 Score = 84.2 bits (92), Expect = 3e-11 Identities = 130/183 (71%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 47865 ACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCCATAAAATCAAAT 47924 || || || || |||||||| ||||| ||||||| ||||| | ||||| |||||||| Sbjct 618286 ACTCGCTTTTCAAAAAAATTTGTTTTTCCTTCCAGAGATATCATGTCCATGAAATCAAAA 618345 Query 47925 GGATTAACTG-CATTATAAAtttttttAAATCCTAATTCTGAAATCAGTCTATCTGCAAC 47983 || || ||| | || || | ||| || || | | | || ||||| ||| |||| Sbjct 618346 GGGTTT-CTGACGTTGTATAATTTGTTGTTCCCAAGTGCATTAAGCAGTCCATCCGCAAT 618404 Query 47984 GAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGTAGAGC 48043 ||| || || ||| | ||||| ||| ||||||||||||| | | |||||| | ||| Sbjct 618405 GAACTCGATGTATATGCACATCAGCTCATAATTCATTCCTATCAAGTCAACTGGAATAGC 618464 Query 48044 CTC 48046 || Sbjct 618465 ATC 618467 >seq23 Length=3600692 Score = 111 bits (122), Expect = 2e-19 Identities = 366/560 (65%), Gaps = 12/560 (2%) Strand=Plus/Plus Query 48140 ACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 48199 ||| || ||||| ||| | ||||||||||| || || | ||||| ||| | || || Sbjct 3498578 ACACGCGAAATCGGTATGTAAACCTTCATCTCGGCTGATGAGCTCGTTTGAATAAGTTAG 3498637 Query 48200 ACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAA 48259 || ||||| || || || || || | ||| || || | ||||| || |||||||| || Sbjct 3498638 GCCAGGCATCAGGCCGCGCTTCTTTAACCAGAAAATGGAAGCGAACGACCCAGAAAAAAA 3498697 Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCG-TTGT--- 48315 || || || || || || ||||| | ||||||| | || | |||||| |||| Sbjct 3498698 GATTCCCTCGACAGCAGCGAATGCCACCAATCTCTCTGCAAAAGT-GCTTCGTTTGTCAG 3498756 Query 48316 GTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCAT 48375 |||||| | ||||| || || || ||| | || || ||||||||||| || | Sbjct 3498757 ATATCCATTTGAGGGCCCAGTCGGCTTTGCGCTTGATGCACGGTATTGTTTCTATTGCGT 3498816 Query 48376 TAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACA 48435 |||||| | || ||| ||| || ||||| ||||| || | ||| || Sbjct 3498817 CGAAGAGATATGCGCGTTGATTAAGATCCTTGACGTATGTATCGATAAGCAGAGAGTAAG 3498876 Query 48436 TTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTG-TG 48494 |||| || |||| ||||| || || || || || ||||| | | ||| || | || Sbjct 3498877 TTTCAGAATGAACGTTTTCCATCATTATTTGGAACCCATAAAAGTAGCGCGCCTCAGCTG 3498936 Query 48495 ATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCA 48554 | || || || | |||| || || || ||| || || || || || ||| || Sbjct 3498937 CT-TGCACTTCGTTTGAAAAGCGCTCCAACAGATTTTCGTTCACGATACCGTCAGAGGCG 3498995 Query 48555 GCAAAAAATGCTAATACATGTTTAATAAAAT---ATTTTTCGTTG-GAAGTCAGTTTATT 48610 ||||| ||||| | || || | || |||| | || ||| | || | | || Sbjct 3498996 GCAAAGAATGCAAGGACGTGGGTGATGAAATGACGCTCGTCATTGTTTAATC-GCTCGTT 3499054 Query 48611 CCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGC 48670 |||||| | ||| | | | || | ||||| | ||||| || ||||| ||||| Sbjct 3499055 CCAGTCGACAAGATCATGAGTGAGGTCAATCTCTTCCGAGGTCCAGAACGATGCTTCTGC 3499114 Query 48671 TTTTTTATACATATTCCATA 48690 ||| || ||||| | ||||| Sbjct 3499115 TTTCTTGTACATCTGCCATA 3499134 Score = 93.3 bits (102), Expect = 6e-14 Identities = 161/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 78015 AAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCT 78074 |||||||| || |||||||||||| |||| ||| |||| | ||| || || || Sbjct 922880 AAGAGATCCGGAATCCATAGAGCATAGAATAAATCACGGGCGCGCACTTCCTCTTTGCCA 922939 Query 78075 GTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATT 78134 |||||| | | ||||| | | | | ||||||| |||||| ||||| ||||| || Sbjct 922940 TGATTCTTCCTCAAATCGATCATCGCGAAGATATCAGCATGCCAAGGTTCGAGATAGATA 922999 Query 78135 GCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAA 78194 || | | | ||||| || || ||||| || || || | ||||| || || ||| || Sbjct 923000 GCGAAAGCCCCAGGACGCTTGTTACCACCTTGGTCGACATATCGTGCAGTAGCATTGTAC 923059 Query 78195 ACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAA 78248 | | | |||||| | |||||| || || ||||| || || | ||| ||| Sbjct 923060 GCCCGAAGCATTGGCACAATACCATTCGAGTACCCATTCGTGCCGGCAATGTAA 923113 Score = 84.2 bits (92), Expect = 3e-11 Identities = 124/173 (72%), Gaps = 6/173 (3%) Strand=Plus/Plus Query 76782 GTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGA 76841 ||||||||||||| || ||| |||||||| | | |||||||| |||||||| | Sbjct 921478 GTAAACTGAATTGCTTGAGCTGCAGGTTTTGTCCTCAAGTAGTACATGCCAGTTTTCAAT 921537 Query 76842 CCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGA---ATAACTAGGATCGGCT 76898 ||| |||| ||||||||||||||||| |||| || || || | | || ||| Sbjct 921538 CCCTTCTTCCACCCGTAGAAATGCATGCTCGTCAATT--GACCCAT-AGTTGGCGAGGCG 921594 Query 76899 ATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGC 76951 | ||||| ||||| ||||||||| |||||| || || | ||||| || Sbjct 921595 AGATGAACATTCAAACTCTGACTTTGGCAGATGAACGCGCCACGGTCAGCAGC 921647 >seq1 Length=5311644 Score = 84.2 bits (92), Expect = 3e-11 Identities = 135/192 (70%), Gaps = 4/192 (2%) Strand=Plus/Minus Query 76810 TTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGC 76869 |||| | ||||| ||||| || ||||| | ||| |||||||| || |||||||| | Sbjct 5027701 TTGTCCTCAGATAATACATCCCGGTTTTCAAGCCCTTTCTCCATCCATAAAAATGCATAC 5027642 Query 76870 TTGTCAGTTTGGAATAACTA--GGATCGGCTATATGAATATTCATCGACTGACTTTGATC 76927 |||| || | || || ||| ||| | ||||||||||| ||||||||| Sbjct 5027641 TTGTTAGCT--GACCCACAGATGGAGAGGCAAGATGAATATTCAAGCTCTGACTTTGGCA 5027584 Query 76928 GATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAAT 76987 ||| || || || | ||| | || | | | ||| || ||||||||||||||||||| Sbjct 5027583 GATAAACGCGCCACGATCCACGGCAAAATCCAAAATCGTTTTTTGAGGAATTTCCCAAAC 5027524 Query 76988 AGTTTTGAAAAC 76999 ||||| |||| Sbjct 5027523 CGTTTTATAAAC 5027512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694668530815840