Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001562095.1_202016-02-16] 31 sequences; 46,106,741 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq2 170 4e-37 seq29 100 6e-16 seq12 89.7 1e-12 >seq2 Length=1585523 Score = 170 bits (188), Expect = 4e-37 Identities = 175/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| ||| || || ||||| | || |||||||||||| || || || | | Sbjct 1022405 CCACCACGAAGGG--AGAACAAGATGAAGAGTCGATTCTTTTTGGATATTATAATCCGAA 1022348 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||||||||| ||||| || || || |||||||| | ||||||||||||| || Sbjct 1022347 AGAGTGCGGCCATCTTCTAGCTGCTTTCCAGCAAAGATAAGACGTTGTTGGTCAGGAGGG 1022288 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||||||||| || ||||||||||| || || | || || || || || | ||||| Sbjct 1022287 ATACCCTCCTTATCCTGGATCTTTGCCTTCACATTGTCAATGGTATCAGACGACTCGACC 1022228 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || | ||||| ||||| || ||||||||||| || || ||||||||| Sbjct 1022227 TCCAAGGTGATGGTCTTTCCGGTCAAAGTCTTGACAAAGATCTGCATT 1022180 Score = 170 bits (188), Expect = 4e-37 Identities = 153/191 (80%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 ||||| || ||||| ||||||| |||||| || |||||||| | || || || |||||| Sbjct 1022598 TCTTTCTGAATGTTATAGTCAGAAAGCGTACGACCATCCTCCAACTGCTTTCCAGCAAAG 1022539 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 |||||||| |||||||| ||||| || || ||||| || |||||||| || || | Sbjct 1022538 ATCAAACGCTGTTGGTCGGGAGGAATGCCTTCTTTGTCCTGAATCTTTGCCTTGACATTG 1022479 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAG-TCTTAAC 283087 ||||||||||| |||| |||||||| |||||||||||||| || ||||| | |||| || Sbjct 1022478 TCGATAGTGTCAGAAGACTCGACTTCAAGAGTGATCGTCTTTCCGGTCAATGTTCTTCAC 1022419 Query 283088 GAATATCTGCA 283098 || ||||||| Sbjct 1022418 AAAGATCTGCA 1022408 Score = 168 bits (186), Expect = 1e-36 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| || || || ||||| || || || | || ||||| || || ||||| |||| Sbjct 171842 ACCTCCTCGAAGACGAAGGACAAGGTGGAGGGTTGACTCTTTCTGAATATTGTAATCAGA 171901 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||||||| |||||||| | || || || ||||| || | ||||||||||||| ||| Sbjct 171902 AAGCGTGCGACCATCCTCCAACTGCTTGCCAGCAAAAATGAGACGTTGTTGGTCAGGCGG 171961 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||| |||||||| ||||| || || || || | || |||||||| || | || || Sbjct 171962 AATACCTTCCTTGTCCTGGATTTTCGCCTTAACATTGTCAATAGTGTCAGACGACTCAAC 172021 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || |||||||||||||| ||||| | ||||| ||||| |||||||| Sbjct 172022 CTCAAGAGTGATCGTCTTTCCCGTGAGTGTCTTGACGAAGATCTGCAT 172069 Score = 159 bits (176), Expect = 7e-34 Identities = 150/191 (79%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || || || ||||| |||| ||||||||| |||||||| | || || || ||||| Sbjct 171651 TCCTTCTGAATATTGTAATCAGAAAGCGTGCGACCATCCTCCAACTGCTTGCCAGCAAAA 171710 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | ||||||||||||| ||||||||| |||||||| |||||||| || ||||| | Sbjct 171711 ATGAGACGTTGTTGGTCAGGCGGAATACCTTCCTTGTCCTGGATCTTCGCCTTTACATTG 171770 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || || |||||||| | || || || ||||| |||||||| || || | ||||| ||| Sbjct 171771 TCAATGGTGTCCGACGACTCAACCTCCAGAGTAATCGTCTTTCCTGTGAGGGTCTTGACG 171830 Query 283089 AATATCTGCAT 283099 || |||||||| Sbjct 171831 AAGATCTGCAT 171841 Score = 152 bits (168), Expect = 1e-31 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| || ||||| || || || | || || || || ||||||||||||| | Sbjct 172071 CCTCCACGTAGACGAAGAACAAGGTGAAGGGTTGACTCCTTCTGAATGTTGTAGTCAGAA 172130 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| ||||| || || || || ||||| ||||| | |||||||| || ||| Sbjct 172131 AGGGTGCGTCCATCTTCGAGCTGCTTGCCGGCGAAGATTAGTCGTTGTTGATCGGGAGGA 172190 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || |||||||| || || ||||| || || ||| | ||||| ||||| |||| ||||| Sbjct 172191 ATGCCCTCCTTATCCTGTATCTTGGCCTTCACGTTGTCGATCGTGTCTGAAGACTCGACC 172250 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||||||| || ||||| | |||||||| || || ||||| Sbjct 172251 TCCAAAGTGATCGTTTTGCCCGTGAGGGTCTTAACAAAGATTTGCAT 172297 Score = 107 bits (118), Expect = 4e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || ||||| || ||||| | || ||| || || ||||||||||||| | Sbjct 1022179 CCACCACGAAGACGAAGAACAAGATGAAGAGTAGATTCCTTCTGAATGTTGTAGTCAGAA 1022120 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| |||||||| ||||| || |||||||||||||| || ||||| ||| ||| Sbjct 1022119 AGAGTGCGACCATCCTCGAGTTGCTTTCCGGCAAAGATCAATCGCTGTTGATCAGGAGGA 1022060 Query 282993 AT 282994 || Sbjct 1022059 AT 1022058 Score = 91.5 bits (100), Expect = 3e-13 Identities = 85/107 (79%), Gaps = 1/107 (1%) Strand=Plus/Plus Query 282994 TACCCT-CCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 |||||| |||| ||||||||||| ||||| || | ||||||||||| || | || || Sbjct 172755 TACCCTTCCTTATCTTGGATCTTAGCTTTGACATTGTCGATAGTGTCAGAGGACTCAACC 172814 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||||||||| ||||| || || | ||||| ||||| || ||||| Sbjct 172815 TCGAGAGTGATAGTCTTCCCGGTGAGGGTCTTTACGAAGATTTGCAT 172861 Score = 91.5 bits (100), Expect = 3e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 282996 CCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCG 283055 || ||||||||||||||||| ||||| || | || |||||||| |||| ||| || || Sbjct 1021995 CCTTCCTTGTCTTGGATCTTGGCTTTGACATTGTCAATAGTGTCAGAAGATTCAACCTCA 1021936 Query 283056 AGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || || || ||||| || || | ||| || |||||||| |||||| Sbjct 1021935 AGGGTAATAGTCTTCCCAGTAAGAGTTTTGACGAATATTTGCATT 1021891 >seq29 Length=5849119 Score = 100 bits (110), Expect = 6e-16 Identities = 131/179 (73%), Gaps = 3/179 (2%) Strand=Plus/Plus Query 230226 ATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATTTTC 230285 ||||||||||| || | ||| | ||||||||||| ||||| || ||||| | || Sbjct 5169281 ATCGGCATGAACGCGACATTGATGTGTCAATATATCGAGTTCGTTGCCGATCGACTACTC 5169340 Query 230286 GTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTC 230345 || || || || || |||| |||| ||||| | ||||||||||| |||||||| | Sbjct 5169341 GTCGCTCTCGGCAACAAGAAGTTGTACAACTCGACGAACCCCTTCGACTTTATGGACATG 5169400 Query 230346 ATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTA-TCAAAGGC 230403 || || || || ||||| || || | || || ||||| || |||||| |||||||| Sbjct 5169401 ATCTCGCTTCAAGGGAAGACCAA--TTTTTGAGAAGCGGGTGTCCGATTACTCAAAGGC 5169457 >seq12 Length=4000690 Score = 89.7 bits (98), Expect = 1e-12 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 282885 CGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCA 282944 |||||||||| || | ||| ||| || || ||||| ||||| | ||| || || ||| Sbjct 1092386 CGAAGTACCAAGTGGAGCGTCGATTCCTTCTGAATGTTATAGTCGGAAAGAGTTCGTCCA 1092327 Query 282945 TCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATAC 282996 || || ||||| || ||||| ||||||||||||||||| ||| ||||||| Sbjct 1092326 TCTTCGAGTTGCTTTCCGGCGAAGATCAAACGTTGTTGATCAGGAGGAATAC 1092275 Score = 86.0 bits (94), Expect = 1e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 274671 GCATCACGTACGTTCAGCAACTTACCGCGGAGAGGGAAAACGCCATACCTTTCGCGCCCG 274730 || ||||||||||||||||||||||| ||||| || || |||||| | | | ||||| Sbjct 1803321 GCTTCACGTACGTTCAGCAACTTACCTCGGAGGGGAAAGACGCCAAAATTGTTACGCCCT 1803262 Query 274731 ATGACCGAAAGACCGGCGATCGCGAGAGTTGCTGCTGAATCTCCCTCTGTGAGAATCAAA 274790 | || ||||| || ||||| || | | || |||||||| ||||| |||||||| Sbjct 1803261 ACCACTCCGAGACCAGCAATCGCAAGTGCTTTGGCGGAATCTCCTTCTGTAAGAATCAAT 1803202 Query 274791 GTACA 274795 || || Sbjct 1803201 GTGCA 1803197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046738784248274