Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001562095.1_202016-02-16] 31 sequences; 46,106,741 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq9 136 4e-27 seq23 98.7 1e-15 seq31 91.5 2e-13 seq29 87.8 2e-12 >seq9 Length=652519 Score = 136 bits (150), Expect = 4e-27 Identities = 304/448 (68%), Gaps = 14/448 (3%) Strand=Plus/Minus Query 23503 AATAA-ACATGCAAAATCACAATGTAGGCCTTCATC-CCTACTAATCAATTCATTAGAAA 23560 ||||| ||||||||| ||| ||| | |||||||| || || || | |||||| || | Sbjct 464848 AATAAGACATGCAAATTCAGTATGCATTCCTTCATCGCCGGCTGATGAGTTCATTTGAGA 464789 Query 23561 ATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCA-GCAAATGATCCG 23619 | || || || ||||| || ||||| || || |||||||||| |||| ||||| || | Sbjct 464788 ACGTCAAACCCGGCATCAACCCTCGCTTCTTCATCCAAAATA-TGCAGGCAAACGACGCA 464730 Query 23620 GAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCAT-T 23678 ||||| || || || || | || ||||| || || | ||| |||||| || || | Sbjct 464729 GAAAAAAATATGCCTTCGATCGCTGCAAATGCTACCAAACGCTCTGCAAATG-TGAATCT 464671 Query 23679 ATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTC 23738 || ||| |||||||| | ||| || || || ||| | ||| ||| ||||| Sbjct 464670 ATTATCTTGAATCCATTGAAGCGCCCATTTTGCTTTTCTTTTAATGCACGGAATAGTTTC 464611 Query 23739 AATTGCTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAA 23798 ||| | || || | | | ||| | |||| ||||| || | ||| || || Sbjct 464610 AATAGAGTTGAATAACATCGAACGCTCTGGAGCATCTCGAATATAGGTTTGAATAAGCAA 464551 Query 23799 ACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGC 23858 | || ||||||||||||||||||| || |||||| || ||||| ||||| | || Sbjct 464550 AGAGTAGGTTTCAGAATGAATATTTTCCATCATAATCTGGAAACCATAGAAACACCGTGC 464491 Query 23859 TTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAA----ATTTTCGTTAACAATAC 23914 || | || || | || || |||| | || || ||| ||||| ||||||| Sbjct 464490 CTCCGGCACCTGTATTTCGTTGGAAAA----ATGGCGAATGAGATTCTCGTTTACAATAC 464435 Query 23915 CATCACTAGCAGCAAAGAAAGCAAGAAC 23942 |||| ||||||||||| || || || Sbjct 464434 CATCCGACGCAGCAAAGAACGCGAGGAC 464407 >seq23 Length=3600692 Score = 98.7 bits (108), Expect = 1e-15 Identities = 286/437 (65%), Gaps = 4/437 (1%) Strand=Plus/Plus Query 23508 ACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAA 23567 ||| || ||||| ||||| |||||||| | || || | || || ||| | |||| Sbjct 3498578 ACACGCGAAATCGGTATGTAAACCTTCATCTCGGCTGATGAGCTCGTTTGAATAAGTTAG 3498637 Query 23568 TCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAA 23627 || ||||| | || || || || | ||| || || | ||| || || || ||||| || Sbjct 3498638 GCCAGGCATCAGGCCGCGCTTCTTTAACCAGAAAATGGAAGCGAACGACCCAGAAAAAAA 3498697 Query 23628 AATACCCTCAACAGCCGCAAAGGCCACAAGACG-TGTACCAAA-TGTTGCATTATAATCA 23685 || ||||| ||||| || || ||||| | | | | | ||| || | | || ||| Sbjct 3498698 GATTCCCTCGACAGCAGCGAATGCCACCAATCTCTCTGCAAAAGTGCTTCGTTTG--TCA 3498755 Query 23686 GAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCT 23745 || |||||||| | ||| | || || || | ||| |||||||| ||||| Sbjct 3498756 GATATCCATTTGAGGGCCCAGTCGGCTTTGCGCTTGATGCACGGTATTGTTTCTATTGCG 3498815 Query 23746 TTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATAC 23805 | |||||| | | || | | ||| | | |||||||| || || | | || Sbjct 3498816 TCGAAGAGATATGCGCGTTGATTAAGATCCTTGACGTATGTATCGATAAGCAGAGAGTAA 3498875 Query 23806 ATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGAC 23865 |||||||||||| ||||| || || || ||||||||||| | | || |||| Sbjct 3498876 GTTTCAGAATGAACGTTTTCCATCATTATTTGGAACCCATAAAAGTAGCGCGCCTCAGCT 3498935 Query 23866 AATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCA 23925 ||| || || || |||| | | | ||||||||| || ||||| ||| || Sbjct 3498936 GCTTGCACTTCGTTTGAAAAGCGCTCCAACAGATTTTCGTTCACGATACCGTCAGAGGCG 3498995 Query 23926 GCAAAGAAAGCAAGAAC 23942 |||||||| ||||| || Sbjct 3498996 GCAAAGAATGCAAGGAC 3499012 >seq31 Length=1678028 Score = 91.5 bits (100), Expect = 2e-13 Identities = 288/439 (66%), Gaps = 8/439 (2%) Strand=Plus/Plus Query 23509 CATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAAT 23568 |||||||| || || | ||||| || | ||| || | ||| || ||||| || || Sbjct 618616 CATGCAAAGTCGGTGTGCATTCCTTCGTCACGACTGATAAGTTCGTTTGAAAAGGTCAAC 618675 Query 23569 CCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCA-GCAAATGATCCGGAAAAGAA 23627 || |||| |||||| |||||||| |||||||||| |||| || || |||||||| || || Sbjct 618676 CCAGGCAATAATCCACGTTTTTTGATCCAAAATA-TGCACGCGAAAGATCCGGAGAAAAA 618734 Query 23628 AATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCAGA 23687 ||| || || | || | || || || || ||| |||| || | | || || Sbjct 618735 AATTCCTTCGATGGCTGAGAATGCAACGAGTCGTTCCGCAAAAGTAACTTGATCGTCTTC 618794 Query 23688 AATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTTT 23747 |||||| || || ||| || || ||| | || ||| ||||| || | | Sbjct 618795 GATCCATCTTAGTGCCCATGCCGCTTTTTGTTTAATGCAAGGAATCGTTTCGATAGAACT 618854 Query 23748 TAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACAT 23807 || | || | | ||| |||| ||||| || | ||| || ||| ||| | Sbjct 618855 GAACAAGAATGATCGTTCGAATGGATCTTGGATATACGTTTGAATCAGCAAAGAATAAGT 618914 Query 23808 TTCAGAATGAATATTTTCAATAGCAAT--CTGAAACCCATAAAAACATCTAGCTTCAGAC 23865 ||| ||||| || ||||| || || | ||| || ||||| || ||| ||| |||| Sbjct 618915 TTCTGAATGGATGTTTTCCAT--CATTGACTGGAATCCATAGAAGGATCGAGCCTCAGCG 618972 Query 23866 AATTGAACATCATTA-AAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGC 23924 | |||| ||| || | || | | | || |||||||| |||||||| || || Sbjct 618973 ACCTGAATTTCACTAGAGAAGTGACGGATC-AAGTTTTCGTTTACAATACCGTCGGACGC 619031 Query 23925 AGCAAAGAAAGCAAGAACA 23943 ||| || || || || ||| Sbjct 619032 AGCGAAAAATGCTAGCACA 619050 >seq29 Length=5849119 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 23530 CCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTT 23589 || ||||| | ||| || | || || || || | || || ||||||||||| || || Sbjct 5169091 CCCTCATCACGACTGATGAGCTCGTTTGAGAACGCCAAGCCAGGCATTAATCCACGCTTC 5169032 Query 23590 TTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAG 23649 || |||||||| || | || || || || || |||||||| || |||||||| |||||| Sbjct 5169031 TTCATCCAAAAGATGGACGCGAAGGAGCCAGAGAAGAAAATGCCTTCAACAGCAGCAAAG 5168972 Query 23650 GCCACAAGACG 23660 || || ||||| Sbjct 5168971 GCTACGAGACG 5168961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521487797923400