Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001562095.1_202016-02-16] 31 sequences; 46,106,741 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq2 158 3e-33 seq12 87.8 4e-12 >seq2 Length=1585523 Score = 158 bits (174), Expect = 3e-33 Identities = 159/207 (77%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || ||| | || ||||| || |||||| | ||||| || || || Sbjct 1022184 CAGATCTTTGTCAAGACTTTGACCGGAAAGACCATCACCTTGGAGGTCGAGTCGTCTGAT 1022243 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || || |||||| ||||| || || || |||||||| ||||| ||| Sbjct 1022244 ACCATTGACAATGTGAAGGCAAAGATCCAGGATAAGGAGGGTATCCCTCCTGACCAACAA 1022303 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||| || ||||| ||||| |||||||| | |||||| | |||||||| || Sbjct 1022304 CGTCTTATCTTTGCTGGAAAGCAGCTAGAAGATGGCCGCACTCTTTCGGATTATAATATC 1022363 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 ||||||||||| || || ||||||||| Sbjct 1022364 CAAAAAGAATCGACTCTTCATCTTGTT 1022390 Score = 152 bits (168), Expect = 1e-31 Identities = 158/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || ||||| || ||||||||||| | ||||| || |||||| Sbjct 172294 CAAATCTTTGTTAAGACCCTCACGGGCAAAACGATCACTTTGGAGGTCGAGTCTTCAGAC 172235 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| || ||||| ||||| || || || || ||||| || || ||| Sbjct 172234 ACGATCGACAACGTGAAGGCCAAGATACAGGATAAGGAGGGCATTCCTCCCGATCAACAA 172175 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| ||||||||||| || ||||||||||||||| | || ||| | || || ||| | Sbjct 172174 CGACTAATCTTCGCCGGCAAGCAGCTCGAAGATGGACGCACCCTTTCTGACTACAACATT 172115 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || || ||||| || || |||||| Sbjct 172114 CAGAAGGAGTCAACCCTTCACCTTGTT 172088 Score = 134 bits (148), Expect = 3e-26 Identities = 154/206 (75%), Gaps = 1/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAA-AACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGA 177982 || || || ||||| ||| | || ||||| |||||||| || || || || || || Sbjct 1022410 CAGATCTTTGTGAAGAACATTGACCGGAAAGACGATCACTCTTGAAGTCGAGTCTTCTGA 1022469 Query 177983 CACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042 ||| ||||| || ||||| ||||||||||||||||||||| || ||||| ||||| || Sbjct 1022470 CACTATCGACAATGTCAAGGCAAAGATTCAGGACAAAGAAGGCATTCCTCCCGACCAACA 1022529 Query 178043 ACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGT 178102 || | ||||| || ||||| ||| | || ||||| | || ||| | || |||||| | Sbjct 1022530 GCGTTTGATCTTTGCTGGAAAGCAGTTGGAGGATGGTCGTACGCTTTCTGACTATAACAT 1022589 Query 178103 CCAAAAAGAATCAACACTGCATCTTG 178128 || ||||| || || || ||||||| Sbjct 1022590 TCAGAAAGAGTCTACCCTTCATCTTG 1022615 Score = 113 bits (124), Expect = 1e-19 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||||||||| ||||| || || ||||| || || ||| Sbjct 171838 CAGATCTTCGTCAAGACCCTCACAGGAAAGACGATTACTCTGGAGGTTGAGTCGTCGGAC 171779 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || || ||||| |||||||| ||||| || || || ||||| ||| Sbjct 171778 ACCATTGACAATGTAAAGGCGAAGATCCAGGACAAGGAAGGTATTCCGCCTGACCAACAA 171719 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || || || || || ||| | || ||||| | || ||| | ||||| || | Sbjct 171718 CGTCTCATTTTTGCTGGCAAGCAGTTGGAGGATGGTCGCACGCTTTCTGATTACAATATT 171659 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 171658 CAGAAGGAGTCGACTCTTCACCTTG 171634 Score = 84.2 bits (92), Expect = 5e-11 Identities = 83/106 (78%), Gaps = 1/106 (1%) Strand=Plus/Minus Query 178024 GAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGA 178083 ||||||| || ||||| ||||| ||||| || || || || |||||||||||||| | | Sbjct 172421 GAATCCCACCTGACCAACAACGTCTTATATTTGCGGGGAAGCAGCTCGAAGATGGTCGAA 172362 Query 178084 CTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | ||| |||| || ||| | || || ||||| ||||| || ||||| Sbjct 172361 C-CTTTCCGACTACAACATTCAGAAGGAATCCACACTCCACCTTGT 172317 >seq12 Length=4000690 Score = 87.8 bits (96), Expect = 4e-12 Identities = 82/103 (80%), Gaps = 1/103 (1%) Strand=Plus/Plus Query 178026 ATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACT 178085 || ||||| || || ||||| | |||||||||||||| || |||||||||||| | ||| Sbjct 1092277 ATTCCTCCTGATCAACAACGTTTGATCTTCGCCGGAAAGCAACTCGAAGATGGACGAACT 1092336 Query 178086 CTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 ||| |||| |||||| | || || ||||| || || || |||| Sbjct 1092337 CTTTCCGACTATAACATTCAGAAGGAATCGACGCTCCA-CTTG 1092378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730721893014