Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001700625.1_202016-08-08] 335 sequences; 41,818,685 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq48 172 6e-38 seq47 150 2e-31 >seq48 Length=263890 Score = 172 bits (190), Expect = 6e-38 Identities = 299/432 (69%), Gaps = 2/432 (0%) Strand=Plus/Minus Query 16961 AGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTC 17020 ||||| ||||||||| |||||| || || |||| |||||| || ||||| ||| | || Sbjct 116815 AGACACGCGAAATCGGTATGTAAACCTTCATCTCGGCTGATGAGCTCGTTTGAATAAGTT 116756 Query 17021 AACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAG 17080 | || |||||| || || ||||||||||| || || | ||||||||||||||||| Sbjct 116755 AGGCCAGGCATCAGGCCGCGCTTCTTTAACCAGAAAATGGAAGCGAACGACCCAGAAAAA 116696 Query 17081 AATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTC-TTTGTT 17139 || || |||||||| | || || || | |||| || || | || || || ||||| Sbjct 116695 AAGATTCCCTCGACAGCAGCGAATGCCACCAATCTCTCTGCAAAAGT-GCTTCGTTTGTC 116637 Query 17140 ACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGC 17199 | |||||||| | |||| |||||||| |||| ||||| || |||||||| || Sbjct 116636 AGATATCCATTTGAGGGCCCAGTCGGCTTTGCGCTTGATGCACGGTATTGTTTCTATTGC 116577 Query 17200 CTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTA 17259 | || | | | || | || || | | || |||||||| || || ||| Sbjct 116576 GTCGAAGAGATATGCGCGTTGATTAAGATCCTTGACGTATGTATCGATAAGCAGAGAGTA 116517 Query 17260 CATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGC 17319 |||| || || | ||| ||||| ||| || || || |||||| | || || || || Sbjct 116516 AGTTTCAGAATGAACGTTTTCCATCATTATTTGGAACCCATAAAAGTAGCGCGCCTCAGC 116457 Query 17320 TATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGC 17379 | ||| ||||| | || || ||| ||||||||||||||||| ||||| || Sbjct 116456 TGCTTGCACTTCGTTTGAAAAGCGCTCCAACAGATTTTCGTTCACGATACCGTCAGAGGC 116397 Query 17380 GGCGAAAAACGC 17391 ||| || || || Sbjct 116396 GGCAAAGAATGC 116385 >seq47 Length=266373 Score = 150 bits (166), Expect = 2e-31 Identities = 375/566 (66%), Gaps = 15/566 (3%) Strand=Plus/Plus Query 16961 AGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTC 17020 || || ||||| ||| ||| | ||||| || | ||||| || ||||| || || | | Sbjct 37923 AGGCAGGCGAAGTCGGTATGCATACCCTCATCACGACTGATGAGCTCGTTTGAGAACGCC 37982 Query 17021 AACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAG 17080 || || ||||| ||| || ||||| | |||||| || | ||||| || ||||| ||| Sbjct 37983 AAGCCAGGCATTAATCCACGCTTCTTCATCCAAAAGATGGACGCGAAGGAGCCAGAGAAG 38042 Query 17081 AATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTA 17140 || || || || || | ||||| || | | || ||| || | || || || || | Sbjct 38043 AAAATGCCTTCAACAGCAGCAAAGGCTACGAGACGCTCGCCGAAAACCGAGTGTTCGTCA 38102 Query 17141 CGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCC 17200 | ||||| | | |||||||||| || |||| |||||| || || || || || Sbjct 38103 CTGATCCAGCGCAGAGCCCACTCGGCCTTGCGCTTGATGCAAGGAATAGTCTCGATAGCA 38162 Query 17201 TTAAATA--ATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGT 17258 | ||| | | || | || | | |||| | || || || |||||||| || || Sbjct 38163 TCAAAAAGGAAATCACGTTCGACAG--GGTCTTTGATGTATGTGTCGATGAGAAGAGAGT 38220 Query 17259 ACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCG 17318 | | |||||||| ||||||||||| ||||| || ||||| ||||| || || || | Sbjct 38221 AAGTCTCGGAGTGAATGTTCTCCATCATAATCTGGAACCCGTAGAAGCAACGTGCCTCAG 38280 Query 17319 CTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCG 17378 | | || ||||| |||| ||||| ||||| ||||| || ||||| || | Sbjct 38281 CGACCTGTACTTCGTTCGAGAAGCGTTCGAGAAGATTCTCGTTGACAATGCCATCAGAGG 38340 Query 17379 CGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGT-AAGAACGCG- 17436 |||| || ||||| | | | | ||||| | |||| || ||| | | ||| Sbjct 38341 CGGCAAAGAACGCGAGAACACGGGAGATGAAGAA----TCGTTCGCTGTCATTCAGGCGG 38396 Query 17437 -----CCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCC 17491 |||||| | | ||||| |||| ||||| ||||| | ||||| ||| ||| Sbjct 38397 TTGTTCCAGTCATGAAGGTCTTTTGATAAATCCATCTCTTCCGCAGTCCAGAAAGAGGCC 38456 Query 17492 ACTGCCTTTTTATACATATTCCAAAT 17517 | ||||| || ||||| | ||| || Sbjct 38457 TCGGCCTTCTTGTACATTTGCCATAT 38482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517543432777800