Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001700625.1_202016-08-08] 335 sequences; 41,818,685 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq48 194 1e-44 seq38 114 1e-20 seq47 113 4e-20 seq34 111 1e-19 seq5 100 3e-16 >seq48 Length=263890 Score = 194 bits (214), Expect = 1e-44 Identities = 397/581 (68%), Gaps = 27/581 (5%) Strand=Plus/Plus Query 57560 ATATCCAGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGA 57619 |||||||| || || | |||||||| || |||||||||||||| |||||| ||||| Sbjct 116248 ATATCCAGCTAT--GGCAGATGTACAAGAAAGCAGAAGCATCGTTCTGGACCTCGGAAGA 116305 Query 57620 AGTAGACCTGTCTAAGGATCTGAGCGATTGGGATTCCC--TCAAAGAATCT-GAGAGAAA 57676 | ||||| || | ||||| ||| ||| | | | ||| ||| ||| | | Sbjct 116306 GATTGACCTCACTCATGATCTTGTCGACTGGAACGAGCGATTAAACAATGACGAGCGTCA 116365 Query 57677 TTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTT 57736 ||| || | ||||| | || || || ||||| || || ||||| || ||||| ||| | Sbjct 116366 TTTCATCACCCACGTCCTTGCATTCTTTGCCGCCTCTGACGGTATCGTGAACGAAAATCT 116425 Query 57737 GGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCA 57796 | | || | |||||| | |||||||||| | |||||| | | |||||| || || || Sbjct 116426 GTTGGAGCGCTTTTCAAACGAAGTGCAAGCAGCTGAGGCGCGCTACTTTTATGGGTTCCA 116485 Query 57797 AGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAA 57856 | | || |||||||| ||||| |||| || || || || |||||||| ||||| || Sbjct 116486 AATAATGATGGAAAACGTTCATTCTGAAACTTACTCTCTGCTTATCGATACATACGTCAA 116545 Query 57857 GGAC----AACGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCG 57912 ||| | | ||| | | || || ||| |||| || |||||||| || ||| Sbjct 116546 GGATCTTAATCAACGCGCA---TAT-CTCTTCGACGCAATAGAAACAATACCGTGCATC- 116600 Query 57913 CCAAG---AAGGCAGAGTGGTCAATCAAATGGATA----AAAAGCGCCACGGCCACGTTC 57965 ||| || || || ||| | ||||||||||| | || || | | ||| || Sbjct 116601 --AAGCGCAAAGCCGACTGGGCCCTCAAATGGATATCTGACAAACG--AAG--CACTTTT 116654 Query 57966 GCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCG 58025 || ||||| | | || ||||| || ||||| || || || ||||| || || || Sbjct 116655 GCAGAGAGATTGGTGGCATTCGCTGCTGTCGAGGGAATCTTTTTTTCTGGGTCGTTCGCT 116714 Query 58026 GCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTG 58085 | || || ||| | ||||| |||||||||||||| ||||| || | | |||||| | Sbjct 116715 TCCATTTTCTGGTTAAAGAAGCGCGGCCTGATGCCTGGCCTAACTTATTCAAACGAGCTC 116774 Query 58086 ATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCT 58126 || || || || ||| | ||||| ||||| ||||| || Sbjct 116775 ATCAGCCGAGATGAAGGTTTACATACCGATTTCGCGTGTCT 116815 >seq38 Length=308705 Score = 114 bits (126), Expect = 1e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || ||||| || ||||| || | || ||||| |||| Sbjct 189080 ATGCAGATCTTCGTCAAGACCCTCACAGGAAAGACGATTACTCTGGAGGTTGAGTCGTCG 189139 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || || || ||||||||| ||| | ||||| |||||| Sbjct 189140 GACACCATTGACAATGTAAAGGCGAAGATCCAGGACAAGGAGGGCATTCCGCCTGACCAG 189199 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || |||||||| |||||||| || | || | |||||| ||| Sbjct 189200 CAGCGTCTCATTTTTGCTGGCAAGCAGTTGGAGGATGGTCGCACGCTTTCCGATTACAAC 189259 Query 31373 ATTCAAAAAGAATCGACTCTTCATCT 31398 || || || || ||||||||||| || Sbjct 189260 ATCCAGAAGGAGTCGACTCTTCACCT 189285 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| || || || || |||||||| | || ||||| |||| Sbjct 188851 CATGCAGATCTTCGTCAAGACACTCACGGGAAAGACGATCACTCTTGAGGTTGAGTCGTC 188910 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | | || | || || || ||| |||||||||||| | ||||| ||||| Sbjct 188911 TGACACTATTGACAATGTTAAGGCGAAAATCCAGGACAAGGAAGGTATTCCGCCTGACCA 188970 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 || ||||| || || |||||||| |||||||| || | || | ||||| || Sbjct 188971 ACAACGTCTCATTTTTGCTGGCAAGCAGTTGGAGGATGGTCGCACGCTTTCTGATTACAA 189030 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| ||||| || || || || || || ||| | || | || |||| Sbjct 189031 TATTCAGAAAGAGTCAACCCTCCACCTTGTCCTTCGTCTTCGAGGAGGTA 189080 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/215 (70%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| || || ||||| || || |||||||||||||| | || || || | || Sbjct 188623 CATGCAAATCTTTGTTAAGACCCTCACGGGCAAAACGATCACTTTGGAGGTCGAGTCTTC 188682 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | || || | ||| ||| ||||| ||| | || ||||| || Sbjct 188683 AGACACGATCGACAACGTGAAGGCCAAGATACAGGATAAGGAGGGCATTCCTCCCGATCA 188742 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATA 31370 || || ||||| ||||| ||||| ||| | ||||| | | | || | || || | Sbjct 188743 ACAACGACTAATCTTCGCCGGCAAGCAGCTCGAAGA-TGGACGCACCCTTTCTGACTACA 188801 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||||||| || || || || ||||| || || ||| Sbjct 188802 ACATTCAGAAGGAGTCAACCCTTCACCTTGTTCTT 188836 >seq47 Length=266373 Score = 113 bits (124), Expect = 4e-20 Identities = 293/443 (66%), Gaps = 24/443 (5%) Strand=Plus/Minus Query 57696 GCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAA 57755 ||||| || ||||| || ||||| ||||| ||||||||| | ||||| | || || | Sbjct 38353 GCGTTCTTTGCCGCCTCTGATGGCATTGTCAACGAGAATCTTCTCGAACGCTTCTCGAAC 38294 Query 57756 GAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTG 57815 ||||| || || | ||||| | ||||| ||||| || || | || || ||| | Sbjct 38293 GAAGTACAGGTCGCTGAGGCACGTTGCTTCTACGGGTTCCAGATTATGATGGAGAACATT 38234 Query 57816 CATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAAACGT 57875 || || || | || || || |||||||| || ||| | || ||| | ||| |||| Sbjct 38233 CACTCCGAGACTTACTCTCTTCTCATCGACACATACATCAAAGACCCTGTCGA---ACGT 38177 Query 57876 AGA----CTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAG---AAGGCAGAGTG 57928 || || || | || ||||| || || || ||| ||| ||||| ||||| Sbjct 38176 -GATTTCCTTTTTGATGCTATCGAGACTATTCCTTGCATC---AAGCGCAAGGCCGAGTG 38121 Query 57929 GTCAATCAAATGGATAAAAAGCGCCACGGCCACG-----TTCGCCGAGAGGCTAATCGCG 57983 | | | ||||| | | ||| ||| |||| |||| | || | || Sbjct 38120 GGCTCTGCGCTGGATCA-----GTGACGAACACTCGGTTTTCGGCGAGCGTCTCGTAGCC 38066 Query 57984 TTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAG 58043 || || || || ||||| || ||||| || ||| ||| ||| | || |||||||||||| Sbjct 38065 TTTGCTGCTGTTGAAGGCATTTTCTTCTCTGGCTCCTTCGCGTCCATCTTTTGGATGAAG 38006 Query 58044 AAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGT 58103 || || || | ||||| ||| || |||| |||||| | || || || |||||| Sbjct 38005 AAGCGTGGATTAATGCCTGGCTTGGCGTTCTCAAACGAGCTCATCAGTCGTGATGAGGGT 37946 Query 58104 CTCCATACTGATTTTGCGTGCCT 58126 | ||||| || || || ||||| Sbjct 37945 ATGCATACCGACTTCGCCTGCCT 37923 >seq34 Length=329079 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23357 AAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCG 23416 || |||||||| ||||||||||| ||||| | || ||||||||||| ||||||||||| Sbjct 277593 AAGAGATCCGGAATCCATAGAGCATAGAATAAATCACGGGCGCGCACTTCCTCTTTGCCA 277534 Query 23417 GTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACG 23476 ||||| ||||||| | | | || | || |||||||| || ||||| || | Sbjct 277533 TGATTCTTCCTCAAATCGATCATCGCGAAGATATCAGCATGCCAAGGTTCGAGATAGATA 277474 Query 23477 GCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTAC 23536 || || || || || | ||| || || || || ||||| || || || || |||||| Sbjct 277473 GCGAAAGCCCCAGGACGCTTGTTACCACCTTGGTCGACATATCGTGCAGTAGCATTGTAC 277414 Query 23537 ACTCTTAGCATCGGCACGAGACCGTTGGA 23565 | | ||||| ||||| | ||| || || Sbjct 277413 GCCCGAAGCATTGGCACAATACCATTCGA 277385 Score = 109 bits (120), Expect = 5e-19 Identities = 218/315 (69%), Gaps = 6/315 (2%) Strand=Plus/Minus Query 23624 CCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCC 23683 |||||||| ||| | ||||| |||| || || | |||||| || |||||||| || Sbjct 277267 CCTATGCCACCGGCTGATTTGCTGATCAAAGCACAGTTTTTCAGGGTATCGTAGATACCT 277208 Query 23684 TCGATGCTGTCCTCTTTGGTCGCGACCAAGAAA-CACGAAGACATTTGCGCTTTGGGCGT 23742 ||||| || ||||| | || | |||| || || || |||||||| | || || Sbjct 277207 TCGATAGAATCATCTTTCAT-GCAAACAAGGAAGCATGAGGACATTTGAGGCGAAGGGGT 277149 Query 23743 AGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTA 23802 | |||| ||| || || || |||| || || || |||| | ||||| || ||||| Sbjct 277148 ACCGGCATTGAAGAGAGTGGGAGTGGCATGAGTGAAATATCGCTCGGACATGAGGTTGTA 277089 Query 23803 CGTGTCG-ATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCA 23861 || ||| | | | || || || ||||||||||| || | ||||| ||||| |||| Sbjct 277088 TGT-TCGCAAGACATGCTCGATATCGTCTCCGTGTATCCCAACAGCGACCCGCATGATCA 277030 Query 23862 TGTATTGAGGTCTCTCGACCGTGACG-CCGTTAATTTTGAACAGATATGAACGTTGCATC 23920 | | ||| || | ||| | | ||| ||||||| | || ||||| |||| || Sbjct 277029 TATGTTGTGGCCGCTC-AGCAATACGACCGTTAAGGCGAATGAGGTATGACCGTTCCAAG 276971 Query 23921 GTTTTAAATCCAAAA 23935 ||||||||||||||| Sbjct 276970 GTTTTAAATCCAAAA 276956 >seq5 Length=946259 Score = 100 bits (110), Expect = 3e-16 Identities = 148/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| |||| || || |||||||| | || || || | || Sbjct 883810 ATGCAGATCTTTGTGAAGACATTGACCGGAAAGACGATCACTCTTGAAGTCGAGTCTTCT 883751 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | |||| | ||||| || ||| | |||||| |||||| | || |||||||| Sbjct 883750 GACACTATCGACAATGTCAAGGCAAAGATTCA-GGACAAAGAAGGCATTCCTCCCGACCA 883692 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| | || || ||||| || |||||||| || | || | || ||||| Sbjct 883691 ACAGCGTTTGATCTTTGCTGGAAAGCAGTTGGAGGATGGTCGTACGCTTTCTGACTATAA 883632 Query 31372 CATTCAAAAAGAATCGACTCTTCATCT 31398 |||||| ||||| || || |||||||| Sbjct 883631 CATTCAGAAAGAGTCTACCCTTCATCT 883605 Score = 89.7 bits (98), Expect = 5e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || |||||| |||| || || || |||||| | || || || |||| Sbjct 884038 ATGCAGATCTTTGTCAAGACTTTGACCGGAAAGACCATCACCTTGGAGGTCGAGTCGTCT 883979 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | || | || || || ||| | ||| ||||| || | || || ||||| Sbjct 883978 GATACCATTGACAATGTGAAGGCAAAGA-TCCAGGATAAGGAGGGTATCCCTCCTGACCA 883920 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 || ||||| || || ||||| || ||| | ||||| ||| | |||||||| Sbjct 883919 ACAACGTCTTATCTTTGCTGGAAAGCAGCTAGAAGATGGCCGCACTCTTTCGGATTATAA 883860 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || ||||||||||||||||||||||| || || Sbjct 883859 TATCCAAAAAGAATCGACTCTTCATCTTGTTCT 883827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445764533353200