Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001700625.1_202016-08-08] 335 sequences; 41,818,685 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq48 141 9e-29 >seq48 Length=263890 Score = 141 bits (156), Expect = 9e-29 Identities = 374/563 (66%), Gaps = 10/563 (2%) Strand=Plus/Minus Query 13566 AGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCTTAATAATGTCA-- 13623 ||| ||||| |||| ||| |||| || || || ||||||| |||| || || | Sbjct 116906 AGTCAAAAAATCTTGTTCGATAGCAACCGCTTCCGTTATAATTTTCTTGATGATACCCGG 116847 Query 13624 TTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCC 13683 || | || | |||||||| | || | |||||| ||||| ||| | || Sbjct 116846 TTGGGCGGGGCGC--TTTAGATGGGTGGTAAGGAGACACGCGAAATCGGTATGTAAACCT 116789 Query 13684 TCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttttt 13743 ||||||| || || || ||||||||| | |||| || ||||||| || || || ||| Sbjct 116788 TCATCTCGGCTGATGAGCTCGTTTGAATAAGTTAGGCCAGGCATCAGGCCGCGCTTCTTT 116729 Query 13744 AACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCT 13803 ||||| || || | |||||| || || ||||| || |||||||| || ||||| || || Sbjct 116728 AACCAGAAAATGGAAGCGAACGACCCAGAAAAAAAGATTCCCTCGACAGCAGCGAATGCC 116669 Query 13804 ATTAGTCGTTCTCCAAACGATGCTTT-TTTGTTTGATATCCATTTTCTAGCCCATTCAGA 13862 | | || ||| |||| | ||||| ||||| ||||||||||| ||||| || | Sbjct 116668 ACCAATCTCTCTGCAAAAG-TGCTTCGTTTGTCAGATATCCATTTGAGGGCCCAGTCGGC 116610 Query 13863 tttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTTC-CTTCTCTTTAG 13921 ||| || || | |||||||| ||||| | ||| | || | | | | || || Sbjct 116609 TTTGCGCTTGATGCACGGTATTGTTTCTATTGCGTCGAAGAGATATGCGCGTTGATTAAG 116550 Query 13922 -TACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATA 13980 | |||| | ||||||||| ||||| | || ||||||| || | |||||| || Sbjct 116549 ATCCTTG--ACGTATGTATCGATAAGCAGAGAGTAAGTTTCAGAATGAACGTTTTCCATC 116492 Query 13981 GCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTT 14040 ||| || || |||||||| | | || || | ||| || || |||| | Sbjct 116491 ATTATTTGGAACCCATAAAAGTAGCGCGCCTCAGCTGCTTGCACTTCGTTTGAAAAGCGC 116432 Query 14041 TCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTA 14100 || || ||||| || || ||||| ||| || ||||| ||||| | | || | Sbjct 116431 TCCAACAGATTTTCGTTCACGATACCGTCAGAGGCGGCAAAGAATGCAAGGACGTGGGTG 116372 Query 14101 ATAAAGTATTGCTCTTCATTGTT 14123 || || | |||| |||||||| Sbjct 116371 ATGAAATGACGCTCGTCATTGTT 116349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478586795909400