Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001700625.1_202016-08-08] 335 sequences; 41,818,685 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq47 179 5e-40 seq48 168 9e-37 >seq47 Length=266373 Score = 179 bits (198), Expect = 5e-40 Identities = 385/571 (67%), Gaps = 17/571 (3%) Strand=Plus/Plus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || ||||| ||| |||| ||||||||| | ||| || | ||||| || |||| | Sbjct 37926 CAGGCGAAGTCGGTATGCATACCCTCATCACGACTGATGAGCTCGTTTGAGAACGCCAAG 37985 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184 || ||||||| |||||||| || | |||||| || ||||| || || ||||| ||||| Sbjct 37986 CCAGGCATTAATCCACGCTTCTTCATCCAAAAGATGGACGCGAAGGAGCCAGAGAAGAAA 38045 Query 42185 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC-ATAACCGGCACT--GTCATGT 42241 || ||||| || || |||||||| | || | ||| || | ||||| | |||| Sbjct 38046 ATGCCTTCAACAGCAGCAAAGGCTACGAGACGCTCGCCGAAAACCGAGTGTTCGTCACTG 38105 Query 42242 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 42301 ||||| ||||||| |||||||| || | ||||| || || || || |||| | Sbjct 38106 ATCCAGCGCAGAGCCCACTCGGCCTTGCGCTTGATGCAAGGAATAGTCTCGATAGCATCA 38165 Query 42302 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATT 42361 || || | | ||| | ||||| | ||||| ||||| | |||| || | Sbjct 38166 AAAAGGAAATCACGTTCGACAGGGTCTTTGATGTATGTGTCGATGAGAAGAGAGTAAGTC 38225 Query 42362 TCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACC 42421 || || |||||||| || || ||||| || |||||||| || | ||||| | ||| Sbjct 38226 TCGGAGTGAATGTTCTCCATCATAATCTGGAACCCGTAGAAGCAACGTGCCTCAGCGACC 38285 Query 42422 TGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCA 42481 |||||||| | | || ||||| | ||| ||||| || || || ||| ||| ||| Sbjct 38286 TGTACTTCGTTCGAGAAGCGTTCGAGAAGATTCTCGTTGACAATGCCATCAGAGGCGGCA 38345 Query 42482 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAAT-------TTATT 42534 || ||||| | ||| | || || | |||| || ||| | | || || Sbjct 38346 AAGAACGCGAGAACACGGGAGATGAAGAA----TCGTTCGCTGTCATTCAGGCGGTTGTT 38401 Query 42535 CCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGC 42594 ||| |||| | ||||| |||| ||| | ||||| | ||||| || || || || || Sbjct 38402 CCAGTCATGAAGGTCTTTTGATAAATCCATCTCTTCCGCAGTCCAGAAAGAGGCCTCGGC 38461 Query 42595 CTTTTTATACATATTCCAGATATCATGATAT 42625 ||| || ||||| | || ||||| |||||| Sbjct 38462 CTTCTTGTACATTTGCC--ATATC-TGATAT 38489 >seq48 Length=263890 Score = 168 bits (186), Expect = 9e-37 Identities = 371/555 (67%), Gaps = 6/555 (1%) Strand=Plus/Minus Query 42064 ACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAG 42123 ||| ||||||||| || | ||| ||||||| || || | ||||| ||| | || || Sbjct 116813 ACACGCGAAATCGGTATGTAAACCTTCATCTCGGCTGATGAGCTCGTTTGAATAAGTTAG 116754 Query 42124 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAA 42183 || ||||| ||||| ||||| || | ||| || || || || || || |||||||| || Sbjct 116753 GCCAGGCATCAGGCCGCGCTTCTTTAACCAGAAAATGGAAGCGAACGACCCAGAAAAAAA 116694 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCAC---TGTCATG 42240 |||||| || || || || || || | | ||||||| || || | | ||||| Sbjct 116693 GATTCCCTCGACAGCAGCGAATGCCACCAATCTCTCTGCAAAAGTGCTTCGTTTGTCAGA 116634 Query 42241 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 42300 |||||| || | ||||| ||||| || || | || || || |||||||| || | Sbjct 116633 TATCCATTTGAGGGCCCAGTCGGCTTTGCGCTTGATGCACGGTATTGTTTCTATTGCGTC 116574 Query 42301 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACAT 42360 |||||||| || |||| ||| || || ||||||||||| | ||| || | Sbjct 116573 GAAGAGATATGCGCGTTGATTAAGATCCTTGACGTATGTATCGATAAGCAGAGAGTAAGT 116514 Query 42361 TTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAAC 42420 ||| ||||||| |||||| || || || || || || || | | ||||| | | Sbjct 116513 TTCAGAATGAACGTTTTCCATCATTATTTGGAACCCATAAAAGTAGCGCGCCTCAGCTGC 116454 Query 42421 CTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGC 42480 || ||||| | |||| || || | |||||||||||| || |||||| ||| || Sbjct 116453 TTGCACTTCGTTTGAAAAGCGCTCCAACAGATTTTCGTTCACGATACCGTCAGAGGCGGC 116394 Query 42481 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAAT---TTATTCCA 42537 ||| || || | || || | || |||| ||||| ||||| | ||||| Sbjct 116393 AAAGAATGCAAGGACGTGGGTGATGAAATGACGCTCGTCATTGTTTAATCGCTCGTTCCA 116334 Query 42538 ATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTT 42597 || | ||| | || | || | ||||| ||||| || ||||||||||| || Sbjct 116333 GTCGACAAGATCATGAGTGAGGTCAATCTCTTCCGAGGTCCAGAACGATGCTTCTGCTTT 116274 Query 42598 TTTATACATATTCCA 42612 || ||||| | ||| Sbjct 116273 CTTGTACATCTGCCA 116259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671136389604600