Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001700625.1_202016-08-08] 335 sequences; 41,818,685 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq5 147 5e-30 seq38 122 2e-22 seq48 93.3 1e-13 seq67 84.2 5e-11 seq3 84.2 5e-11 >seq5 Length=946259 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 104354 AGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGT 104413 ||||| | ||||| ||||||||||| ||||||||||| || || | ||| || || | Sbjct 883605 AGATGAAGGGTAGACTCTTTCTGAATGTTATAGTCAGAAAGCGTACGACCATCCTCCAAC 883664 Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473 || ||||||||||| || | | |||||| || ||||| || |||||||| ||||||||| Sbjct 883665 TGCTTTCCAGCAAAGATCAAACGCTGTTGGTCGGGAGGAATGCCTTCTTTGTCCTGAATC 883724 Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCA 104533 ||||| || ||||| || | || || || || || || || || || ||||| || Sbjct 883725 TTTGCCTTGACATTGTCGATAGTGTCAGAAGACTCGACTTCAAGAGTGATCGTCTTTCCG 883784 Query 104534 GTAAGTGTTTTTACAAATATCTGCAT 104559 || | ||| || ||||| |||||||| Sbjct 883785 GTCAATGTCTTCACAAAGATCTGCAT 883810 Score = 145 bits (160), Expect = 2e-29 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | || |||||||| || |||||||| || || ||||| | || ||| Sbjct 883827 AGAACAAGATGAAGAGTCGATTCTTTTTGGATATTATAATCCGAAAGAGTGCGGCCATCT 883886 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 ||||| || ||||||||||| || || | ||||| |||||||| || || || |||||| Sbjct 883887 TCTAGCTGCTTTCCAGCAAAGATAAGACGTTGTTGGTCAGGAGGGATACCCTCCTTATCC 883946 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || |||||||| || ||||| || | |||||| | || ||||| | || || ||| Sbjct 883947 TGGATCTTTGCCTTCACATTGTCAATGGTATCAGACGACTCGACCTCCAAGGTGATGGTC 884006 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || || | || || ||||| ||||||||| Sbjct 884007 TTTCCGGTCAAAGTCTTGACAAAGATCTGCATT 884039 Score = 100 bits (110), Expect = 7e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || | ||| || ||||| | |||||||| |||||||| || |||||| Sbjct 884037 ATTCCACCACGAAGACGAAGAACAAGATGAAGAGTAGATTCCTTCTGAATGTTGTAGTCA 884096 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | ||| || || ||||| ||||| ||||| || | | ||||||||||||| Sbjct 884097 GAAAGAGTGCGACCATCCTCGAGTTGCTTTCCGGCAAAGATCAATCGCTGTTGATCAGGA 884156 Query 104450 GGTAT 104454 || || Sbjct 884157 GGAAT 884161 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 104456 CCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCT 104515 ||||| || || || ||||| ||||| ||||| || | || || || ||| ||||| Sbjct 884224 CCTTCCTTGTCTTGGATCTTGGCTTTGACATTGTCAATAGTGTCAGAAGATTCAACCTCA 884283 Query 104516 AGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||||||||| |||||||| ||||| || ||||| ||||| Sbjct 884284 AGGGTAATAGTCTTCCCAGTAAGAGTTTTGACGAATATTTGCAT 884327 >seq38 Length=308705 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||| || | ||| || || || | || || |||||||||||||| || ||| Sbjct 189081 ATACCTCCTCGAAGACGAAGGACAAGGTGGAGGGTTGACTCTTTCTGAATATTGTAATCA 189022 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | ||| || || | || || ||||||||||| || | ||||| ||||| Sbjct 189021 GAAAGCGTGCGACCATCCTCCAACTGCTTGCCAGCAAAAATGAGACGTTGTTGGTCAGGC 188962 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||| || || || || ||||| || | || || | || Sbjct 188961 GGAATACCTTCCTTGTCCTGGATTTTCGCCTTAACATTGTCAATAGTGTCAGACGACTCA 188902 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| || || ||||| || || || |||||||| Sbjct 188901 ACCTCAAGAGTGATCGTCTTTCCCGTGAGTGTCTTGACGAAGATCTGCAT 188852 Score = 107 bits (118), Expect = 4e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || || || || || || | ||| || || | || || ||| Sbjct 189276 GTCGACTCCTTCTGGATGTTGTAATCGGAAAGCGTGCGACCATCCTCCAACTGCTTGCCA 189217 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| || | ||| || ||||| || || || || || ||||| ||||| || ||| Sbjct 189216 GCAAAAATGAGACGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTT 189157 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || | || ||||| || ||||| ||||| || || || || Sbjct 189156 ACATTGTCAATGGTGTCCGACGACTCAACCTCCAGAGTAATCGTCTTTCCTGTGAGGGTC 189097 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 189096 TTGACGAAGATCTGCAT 189080 >seq48 Length=263890 Score = 93.3 bits (102), Expect = 1e-13 Identities = 148/211 (70%), Gaps = 11/211 (5%) Strand=Plus/Plus Query 269081 AAATCTGAATGGGCTCTGAAATGGATA-------AACGATAGCGCGCCTTACGGAGAAAG 269133 ||| | || ||||| || ||||||||| ||||| ||| | || | ||| || Sbjct 116607 AAAGCCGACTGGGCCCTCAAATGGATATCTGACAAACGA-AGCAC---TTTTGCAGAGAG 116662 Query 269134 GTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTT 269193 || || || || || ||||| || || || || ||||| ||||| || || | || || Sbjct 116663 ATTGGTGGCATTCGCTGCTGTCGAGGGAATCTTTTTTTCTGGGTCGTTCGCTTCCATTTT 116722 Query 269194 TTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAG 269253 ||||| ||||| | ||||| ||||| || |||||| || ||||| | || ||| | Sbjct 116723 CTGGTTAAAGAAGCGCGGCCTGATGCCTGGCCTAACTTATTCAAACGAGCTCATCAGCCG 116782 Query 269254 GGACGAAGGTTTACACTGCGACTTCGCTTGT 269284 || ||||||||||| ||| ||||| ||| Sbjct 116783 AGATGAAGGTTTACATACCGATTTCGCGTGT 116813 >seq67 Length=206472 Score = 84.2 bits (92), Expect = 5e-11 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || |||||||||||||| || || ||| ||||| | || || || |||||||||||| Sbjct 157926 GTGGATTCTTTCTGAATGTTGTAATCACTCAGAGTACGTCCATCCTCAAGTTGTTTTCCA 157867 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTC 104456 || ||||| || | |||||||||||| || |||| Sbjct 157866 GCGAAAATGAGTCGCTGTTGATCAGGGGGAATTC 157833 >seq3 Length=995293 Score = 84.2 bits (92), Expect = 5e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 104344 CCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACC 104403 || |||||| | || | || ||||| |||||||| |||||||| || ||||||| || Sbjct 452113 CCGAAGTACCAAGTGGAGCGTCGATTCCTTCTGAATGTTATAGTCGGAAAGAGTTCGTCC 452172 Query 104404 GTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTAT 104454 ||||| ||||| ||||| || || || | | |||||||||||||| || Sbjct 452173 ATCTTCGAGTTGCTTTCCGGCGAAGATCAAACGTTGTTGATCAGGAGGAAT 452223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151393457982180