Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001700625.1_202016-08-08] 335 sequences; 41,818,685 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq5 127 2e-24 seq38 91.5 1e-13 >seq5 Length=946259 Score = 127 bits (140), Expect = 2e-24 Identities = 158/213 (74%), Gaps = 5/213 (2%) Strand=Plus/Plus Query 94798 CACCAAG-TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATC 94854 ||||||| || | ||||| || || || | |||||| || | || || || ||| Sbjct 883600 CACCAAGATGAAGGGTAGACTCTTTCTGAATGTTATAGTCAG--AAAGCGTACGACCATC 883657 Query 94855 CTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTC 94914 ||||| ||| ||||| ||||||| || | || || || |||||||| ||||||||||| Sbjct 883658 CTCCAACTGCTTTCCAGCAAAGATCAAACGCTGTTGGTCGGGAGGAATGCCTTCTTTGTC 883717 Query 94915 ATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGT 94974 | ||| ||||||||||| | ||| |||||||| ||||| |||| ||||| || Sbjct 883718 CTGAATCTTTGCCTTGACATTGTCGATAGTGTCAGAAGACTCGACTTCAAGAGTGATCGT 883777 Query 94975 TTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || | || ||||||||||||||||| Sbjct 883778 CTTTCCGGTCAATGTCTTCACAAAGATCTGCAT 883810 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 94801 CAAG-TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCA 94859 |||| || | ||| ||||| ||||| | |||||||| | |||| | ||| || | Sbjct 883831 CAAGATGAAGAGTCGATTCTTTTTGGATATTATAATCCGAAAGAGTGCGGCCATCTTCTA 883890 Query 94860 GCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAA 94919 |||| ||||| ||||||| | | ||| || || ||||| ||||| || || || | | Sbjct 883891 GCTGCTTTCCAGCAAAGATAAGACGTTGTTGGTCAGGAGGGATACCCTCCTTATCCTGGA 883950 Query 94920 TTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTC 94979 | |||||||| || | | | || |||| ||||| || | |||||||| |||| Sbjct 883951 TCTTTGCCTTCACATTGTCAATGGTATCAGACGACTCGACCTCCAAGGTGATGGTCTTTC 884010 Query 94980 CAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || | ||| || |||||||||||||| Sbjct 884011 CGGTCAAAGTCTTGACAAAGATCTGCAT 884038 >seq38 Length=308705 Score = 91.5 bits (100), Expect = 1e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||||| ||| || || |||| || | | ||| || || || ||||||||||| || Sbjct 189007 ATCCTCCAACTGCTTGCCAGCAAAAATGAGACGTTGTTGGTCAGGCGGAATACCTTCCTT 188948 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||||| ||||| || | | | |||||||| || || |||| ||||| Sbjct 188947 GTCCTGGATTTTCGCCTTAACATTGTCAATAGTGTCAGACGACTCAACCTCAAGAGTGAT 188888 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || ||||| || || || || || ||||||||||||| Sbjct 188887 CGTCTTTCCCGTGAGTGTCTTGACGAAGATCTGCATGC 188850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448289322780600