Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001700625.1_202016-08-08] 335 sequences; 41,818,685 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq106 122 1e-23 seq19 116 6e-22 seq85 105 1e-18 seq153 96.9 5e-16 seq134 96.9 5e-16 seq57 96.9 5e-16 >seq106 Length=143602 Score = 122 bits (134), Expect = 1e-23 Identities = 117/150 (78%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 16471 AGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||| |||||||| || || || |||||||| || ||||||||||| ||||| ||| | || Sbjct 7411 AGGTATCACCAAACCTGCGATTCGTCGTCTCGCCCGTCGTGGTGGTGTCAAACGTATTTC 7352 Query 16531 TGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCA 16590 || || |||||||||||| || | ||| || |||||||||||| ||| ||||||| Sbjct 7351 CGGTCTGATCTATGAAGAGACGCGAGGTGTATTAAAGATCTTCCTCGAGAATGTTATCCG 7292 Query 16591 TGATGCTTTCCACTATACCGAGCACGCTAA 16620 ||| || | ||| ||||||||||| || Sbjct 7291 TGACTCTGTTACCTACACCGAGCACGCGAA 7262 >seq19 Length=456156 Score = 116 bits (128), Expect = 6e-22 Identities = 123/161 (76%), Gaps = 1/161 (1%) Strand=Plus/Plus Query 16471 AGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 |||||||||||| || || || |||||||| || ||||||||||||||||||||| |||| Sbjct 233640 AGGAATCACCAAACCTGCCATTCGTCGTCTCGCCCGTCGTGGTGGAGTCAAGCGTATCTC 233699 Query 16531 TGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCA 16590 ||| | | || ||||| | ||| | || ||||||| ||||| | | ||||| | Sbjct 233700 TGGTCTCATTTACGAAGAAACTCGCGGCGTACTGAAGATTTTCCTGGAAAATGTTATTCG 233759 Query 16591 TGATGCTTTCCACTATACCGAGCACGCTAAAC-GTAAGACT 16630 |||| | | || |||||||||||||||| ||||| || Sbjct 233760 TGATTCCGTAACATACACCGAGCACGCTAAACGGTAAGTCT 233800 >seq85 Length=179005 Score = 105 bits (116), Expect = 1e-18 Identities = 119/158 (75%), Gaps = 1/158 (1%) Strand=Plus/Minus Query 16471 AGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||| ||||| || || |||||||||||||| || ||||||||||| || |||||| |||| Sbjct 76848 AGGTATCACAAAACCCGCTATCCGTCGTCTCGCCCGTCGTGGTGGTGTGAAGCGTATCTC 76789 Query 16531 TGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCA 16590 || | |||| ||||| | |||| ||| | ||||||||| | ||| ||| || | Sbjct 76788 CGGTCTCATCTACGAAGAAACCCGTGGTGTGCTCAAGATCTTCTTGGAGAACGTCATTCG 76729 Query 16591 TGATGCTTTCCACTATACCGAGCACGCTAAAC-GTAAG 16627 ||| || || || || || |||||||||| ||||| Sbjct 76728 CGATTCTGTCACGTACACTGAACACGCTAAACGGTAAG 76691 >seq153 Length=68438 Score = 96.9 bits (106), Expect = 5e-16 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 16471 AGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||| || || ||||| ||||| |||||||| || |||||||| || ||||||||| | || Sbjct 16480 AGGCATAACAAAGCCTGCTATTCGTCGTCTCGCACGTCGTGGAGGTGTCAAGCGTATTTC 16421 Query 16531 TGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 ||| || |||||||||||| ||||| ||| | || || |||||| Sbjct 16420 TGGTCTGATCTATGAAGAGACTCGTGGTGTCCTCAAAATTTTCCTC 16375 >seq134 Length=88740 Score = 96.9 bits (106), Expect = 5e-16 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 16471 AGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||| || || ||||| ||||| |||||||| || |||||||| || || || ||| |||| Sbjct 46366 AGGTATAACAAAGCCCGCTATTCGTCGTCTTGCGCGTCGTGGAGGTGTTAAACGTATCTC 46425 Query 16531 TGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 ||| | |||| ||||||| ||||| |||| | |||||||||||| Sbjct 46426 TGGTCTTATCTACGAAGAGACTCGTGGTGTTCTTAAGATCTTCCTC 46471 >seq57 Length=233077 Score = 96.9 bits (106), Expect = 5e-16 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 16471 AGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||| || ||||| || ||||| || ||||| ||||||||||| || || |||||| | || Sbjct 71251 AGGTATTACCAAACCCGCTATTCGCCGTCTTGCTCGTCGTGGAGGTGTAAAGCGTATTTC 71310 Query 16531 TGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCA 16590 ||| | |||| ||||| | |||| ||| || ||||||||||| ||| || || | Sbjct 71311 TGGTCTCATCTACGAAGAAACCCGTGGTGTATTAAAGATCTTCCTTGAGAATGTCATTCG 71370 Query 16591 TGATGCTTTCCACTATACCGAGCACGCTAAACG 16623 ||| || | ||||| || || |||||||| Sbjct 71371 TGACTCTGTAACGTATACTGAACATGCTAAACG 71403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074893707155