Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001700625.1_202016-08-08] 335 sequences; 41,818,685 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq47 190 3e-43 seq48 181 1e-40 >seq47 Length=266373 Score = 190 bits (210), Expect = 3e-43 Identities = 384/564 (68%), Gaps = 8/564 (1%) Strand=Plus/Plus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || ||||| ||| |||| |||||| || | ||| || || ||||| || |||| | Sbjct 37926 CAGGCGAAGTCGGTATGCATACCCTCATCACGACTGATGAGCTCGTTTGAGAACGCCAAG 37985 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 || ||||||| |||||||| || | |||||| ||||| ||||| || ||||| ||||| Sbjct 37986 CCAGGCATTAATCCACGCTTCTTCATCCAAAAGATGGACGCGAAGGAGCCAGAGAAGAAA 38045 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCC-ATAACCG-GCGCT-GTCATGT 33480 || ||||| || ||||||||||| | || | ||| || | ||||| | | | |||| Sbjct 38046 ATGCCTTCAACAGCAGCAAAGGCTACGAGACGCTCGCCGAAAACCGAGTGTTCGTCACTG 38105 Query 33481 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33540 ||||| ||||||| |||||||| || | ||||| || || || || |||| | Sbjct 38106 ATCCAGCGCAGAGCCCACTCGGCCTTGCGCTTGATGCAAGGAATAGTCTCGATAGCATCA 38165 Query 33541 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33600 || || | | ||| | ||||| | || || ||||| | |||| || | Sbjct 38166 AAAAGGAAATCACGTTCGACAGGGTCTTTGATGTATGTGTCGATGAGAAGAGAGTAAGTC 38225 Query 33601 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33660 || || |||||||| || || ||||| || |||||||| || | ||||| | | | Sbjct 38226 TCGGAGTGAATGTTCTCCATCATAATCTGGAACCCGTAGAAGCAACGTGCCTCAGCGACC 38285 Query 33661 TGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCA 33720 |||||||| | | || ||||| | ||| || || || || || ||| ||| ||| Sbjct 38286 TGTACTTCGTTCGAGAAGCGTTCGAGAAGATTCTCGTTGACAATGCCATCAGAGGCGGCA 38345 Query 33721 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT----AGTTTATTCCA 33776 || ||||| | ||| | || || || |||| ||| || | || ||||| Sbjct 38346 AAGAACGCGAGAACACGGGAGATGAAGAATCGTTCG-CTGTCATTCAGGCGGTTGTTCCA 38404 Query 33777 ATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 33836 |||| | ||||| |||| ||| | |||||| | ||||| || || ||||| ||||| Sbjct 38405 GTCATGAAGGTCTTTTGATAAATCCATCTCTTCCGCAGTCCAGAAAGAGGCCTCGGCCTT 38464 Query 33837 TTTATACATGTTCCAGATGTCATA 33860 || ||||| | ||| || | ||| Sbjct 38465 CTTGTACATTTGCCATATCTGATA 38488 >seq48 Length=263890 Score = 181 bits (200), Expect = 1e-40 Identities = 376/555 (68%), Gaps = 6/555 (1%) Strand=Plus/Minus Query 33303 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 33362 ||| ||||||||| || | ||| || |||| || || || ||||| ||| | || || Sbjct 116813 ACACGCGAAATCGGTATGTAAACCTTCATCTCGGCTGATGAGCTCGTTTGAATAAGTTAG 116754 Query 33363 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAA 33422 || ||||| ||||| ||||| || | ||| || ||||||||||| || |||||||| || Sbjct 116753 GCCAGGCATCAGGCCGCGCTTCTTTAACCAGAAAATGGAAGCGAACGACCCAGAAAAAAA 116694 Query 33423 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAA--CCGGCG-CTGTCATG 33479 |||||| || || ||||| || || | | ||||||| || || | || ||||| Sbjct 116693 GATTCCCTCGACAGCAGCGAATGCCACCAATCTCTCTGCAAAAGTGCTTCGTTTGTCAGA 116634 Query 33480 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33539 |||||| || | ||||| ||||| || || | || || || |||||||| || | Sbjct 116633 TATCCATTTGAGGGCCCAGTCGGCTTTGCGCTTGATGCACGGTATTGTTTCTATTGCGTC 116574 Query 33540 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33599 |||||||| || |||| ||| || || || |||||||| | ||| || | Sbjct 116573 GAAGAGATATGCGCGTTGATTAAGATCCTTGACGTATGTATCGATAAGCAGAGAGTAAGT 116514 Query 33600 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33659 ||| ||||||| |||||| || || || || || || || | | ||||| | Sbjct 116513 TTCAGAATGAACGTTTTCCATCATTATTTGGAACCCATAAAAGTAGCGCGCCTCAGCTGC 116454 Query 33660 CTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGC 33719 || ||||| | |||| || ||| || |||||| ||||| || |||||| ||| || Sbjct 116453 TTGCACTTCGTTTGAAAAGCGCTCCAACAGATTTTCGTTCACGATACCGTCAGAGGCGGC 116394 Query 33720 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGT--TAGTTTATTCCA 33776 ||| || || | || || | || |||| ||||| | || | | | | ||||| Sbjct 116393 AAAGAATGCAAGGACGTGGGTGATGAAATGACGCTCGTCATTGTTTAATCGCTCGTTCCA 116334 Query 33777 ATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 33836 || | ||| | || | || | |||||| ||||| || ||||| ||||| || Sbjct 116333 GTCGACAAGATCATGAGTGAGGTCAATCTCTTCCGAGGTCCAGAACGATGCTTCTGCTTT 116274 Query 33837 TTTATACATGTTCCA 33851 || ||||| | ||| Sbjct 116273 CTTGTACATCTGCCA 116259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622944591408600