Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001700625.1_202016-08-08] 335 sequences; 41,818,685 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq34 107 5e-18 seq47 100 7e-16 seq48 89.7 1e-12 >seq34 Length=329079 Score = 107 bits (118), Expect = 5e-18 Identities = 160/226 (71%), Gaps = 6/226 (3%) Strand=Plus/Plus Query 363735 TTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGA 363794 ||||||| |||||| || ||||||||||| | || || |||||||| | || | Sbjct 277360 TTACATTGCCGGCACGAATGGGTACTCGAATGGTATTGTGCCAATGCTTCGGGCGT---A 277416 Query 363795 CAA---TACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTAT 363851 ||| |||||| | || |||||||| ||||| ||||| ||||| || ||||| Sbjct 277417 CAATGCTACTGCACGATATGTCGACCAAGGTGGTAACAAGCGTCCTGGGGCTTTCGCTAT 277476 Query 363852 GTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGG 363911 |||||||| ||| ||||| ||||| || | | | | || | |||| || || Sbjct 277477 CTATCTCGAACCTTGGCATGCTGATATCTTCGCGATGATCGATTTGAGGAAGAATCATGG 277536 Query 363912 AAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTT 363957 ||||||||| |||| || |||||| | |||||||| || ||| || Sbjct 277537 CAAAGAGGAAGTGCGCGCCCGTGATTTATTCTATGCTCTATGGATT 277582 >seq47 Length=266373 Score = 100 bits (110), Expect = 7e-16 Identities = 146/206 (71%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 22441 AAGGCAGATTGGGCGCTGAAATGGATGAACAATGAACGTTCA---TTCGCGGAACGTCTT 22497 ||||| || ||||| ||| ||||| | | |||| || |||| || ||||| Sbjct 38131 AAGGCCGAGTGGGCTCTGCGCTGGATCAGTGACGAACACTCGGTTTTCGGCGAGCGTCTC 38072 Query 22498 ATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGG 22557 | || ||||||| ||||||||||||||||| ||||| | || | ||||||||| Sbjct 38071 GTAGCCTTTGCTGCTGTTGAAGGCATTTTCTTCTCTGGCTCCTTCGCGTCCATCTTTTGG 38012 Query 22558 CTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGAT 22617 | || || |||| | | ||||| || | |||| ||||| ||| | || || || ||| Sbjct 38011 ATGAAGAAGCGTGGATTAATGCCTGGCTTGGCGTTCTCAAACGAGCTCATCAGTCGTGAT 37952 Query 22618 GAGGGTCTTCATACCGATTTTGCGTG 22643 |||||| | |||||||| || || || Sbjct 37951 GAGGGTATGCATACCGACTTCGCCTG 37926 >seq48 Length=263890 Score = 89.7 bits (98), Expect = 1e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 22501 GCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGCTa 22560 ||||| |||| || || || || || |||||||| | || | | || || ||| || Sbjct 116670 GCATTCGCTGCTGTCGAGGGAATCTTTTTTTCTGGGTCGTTCGCTTCCATTTTCTGGTTA 116729 Query 22561 aaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGAG 22620 || || || | | ||||| || ||||| | |||||| ||| | || ||||||||||| Sbjct 116730 AAGAAGCGCGGCCTGATGCCTGGCCTAACTTATTCAAACGAGCTCATCAGCCGAGATGAA 116789 Query 22621 GGTCTTCATACCGATTTTGCGTGT 22644 ||| | ||||||||||| |||||| Sbjct 116790 GGTTTACATACCGATTTCGCGTGT 116813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303348005761970