Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001700625.1_202016-08-08] 335 sequences; 41,818,685 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq5 102 7e-17 seq38 87.8 2e-12 >seq5 Length=946259 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || ||||| || ||||| |||| || | ||||||||| | Sbjct 883810 ATGCAGATCTTTGTGAAGACATTGACCGGAAAGACGATCACTCTTGAAGTCGAGTCTTCT 883751 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | ||||| ||||||| |||||||||||||| |||||||| ||| Sbjct 883750 GACACTATCGACAATGTCAAGGCAAAGATTCAGGACAAAGAAGGCATTCCTCCCGACCAA 883691 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | |||| | | || ||||| | || |||| | | | || |||||| Sbjct 883690 CAGCGTTTGATCTTTGCTGGAAAGCAGTTGGAGGATGGTCGTACGCTTTCTGACTATAAC 883631 Query 24171 ATTCAAAAAGAATCTACAATTCAT 24194 ||||| ||||| ||||| ||||| Sbjct 883630 ATTCAGAAAGAGTCTACCCTTCAT 883607 >seq38 Length=308705 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || | || || ||| |||| || | || |||||| | Sbjct 188624 ATGCAAATCTTTGTTAAGACCCTCACGGGCAAAACGATCACTTTGGAGGTCGAGTCTTCA 188683 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | || || ||||| || || || ||||| |||||||||||| Sbjct 188684 GACACGATCGACAACGTGAAGGCCAAGATACAGGATAAGGAGGGCATTCCTCCCGATCAA 188743 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || |||| || | || ||||||||| |||||||||| | | | | || || ||| Sbjct 188744 CAACGACTAATCTTCGCCGGCAAGCAGCTCGAAGATGGACGCACCCTTTCTGACTACAAC 188803 Query 24171 ATTCAAAAAGAATCTACAATTCA 24193 ||||| || || || || |||| Sbjct 188804 ATTCAGAAGGAGTCAACCCTTCA 188826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429934244651925