Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001700625.1_202016-08-08] 335 sequences; 41,818,685 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq151 140 2e-28 seq121 127 1e-24 seq97 127 1e-24 seq39 104 2e-17 seq5 98.7 7e-16 seq38 84.2 1e-11 >seq151 Length=71382 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 15177 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 15236 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 15237 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 15271 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||||||||||| |||||||||||||||||||||||||||||||||| | Sbjct 17181 CTCTCTTTCCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 17240 Query 20007 GGTAATATTTAGCCTTA 20023 |||||||||| ||| Sbjct 17241 CCCAATATTTAGCTTTA 17257 >seq121 Length=112394 Score = 127 bits (140), Expect = 1e-24 Identities = 84/93 (90%), Gaps = 5/93 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 13870 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 13929 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 |||||| || |||||| |||||||||||||||| Sbjct 13930 TAATCCATTTATGCGCATCACTAATTAGATGAC 13962 >seq97 Length=159943 Score = 127 bits (140), Expect = 1e-24 Identities = 257/379 (68%), Gaps = 12/379 (3%) Strand=Plus/Minus Query 6232 CCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCG 6291 |||| | || || || || || || ||||||||||||||| |||||| | || || | Sbjct 151242 CCAAAATTGAAGGCAAAGGGAATGGCATTAAAACCGTCATTCCTAACATGGCCGACGTAG 151183 Query 6292 CTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCG 6351 || ||| | | || ||| | |||| || || |||| ||||| ||||||||||| | Sbjct 151182 CTCGTGCGTTGAGCCGTCCTCCTGCCTATCCTACCAAATTCTTCGGCTGCGAACTTGGTG 151123 Query 6352 CTCAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTG 6411 | ||||| ||||||| | || || || |||| |||||| ||||| | ||| | || Sbjct 151122 CGCAGACCTCGTTTGATGAAAAGAATGAACGCTACATCGTCAACGGCGCTCATGATGCTA 151063 Query 6412 CCAAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCG 6471 | || | ||| || ||||||||||| ||| ||| || || | || | ||| Sbjct 151062 ACCGCCTTCGGGAATTGCTTGACGGCTTCATTGACAAATTCGTCTTATGCAAGTCTTGCA 151003 Query 6472 ATAACCCGGAGACCGAGCTTATTGT-GTCTACCAAG-----AGAAACACCATCTCTCAGG 6525 | |||||||| || ||||| || | | | |||| || | |||| | | Sbjct 151002 AGAACCCGGAAACGGAGCTCATCATCCTAAAACAAGGTCGTAGCGAGGACATCATCCGCG 150943 Query 6526 GCTGCAAAGCGTGCGGTTA---CCATGGCAAGCTGGATTTATCACACAAACTCAACACCT 6582 ||||||||| |||||| | | |||| | ||| | |||||||||| ||| | Sbjct 150942 ACTGCAAAGCCTGCGGTGAACGCACTGGC---GTCGATATGCGTCACAAACTCACCACAT 150886 Query 6583 TCATACTGAAGAATCCTCC 6601 ||||| ||||||||||||| Sbjct 150885 TCATATTGAAGAATCCTCC 150867 >seq39 Length=306756 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||||||||||| |||||||||||||||||||||||||||||||||| | Sbjct 15270 CTCTCTTTCCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 15211 Query 20007 GGTAATATTTAGCCTTA 20023 |||||||||| ||| Sbjct 15210 CCCAATATTTAGCTTTA 15194 >seq5 Length=946259 Score = 98.7 bits (108), Expect = 7e-16 Identities = 149/211 (71%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 38108 CACCAA-ATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGT 38166 |||||| |||||| || ||| || ||||| || || ||||| | ||| | || | Sbjct 883600 CACCAAGATGAAGGGTAGACTCTTTCTGAATGTTATAGTCAGAAAGCGTACGACCATCCT 883659 Query 38167 CTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCA 38226 | || || ||||| ||||| || | || ||||| |||| || | ||||||||||||| Sbjct 883660 CCAACTGCTTTCCAGCAAAGATCAAACGCTGTTGGTCGGGAGGAATGCCTTCTTTGTCCT 883719 Query 38227 TAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTT 38286 ||| ||| ||| ||||| | || ||| || | || ||||| | || || || | Sbjct 883720 GAATCTTTGCCTTGACATTGTCGATAGTGTCAGAAGACTCGACTTCAAGAGTGATCGTCT 883779 Query 38287 TACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || ||||| || ||||| || |||||||| Sbjct 883780 TTCCGGTCAATGTCTTCACAAAGATCTGCAT 883810 >seq38 Length=308705 Score = 84.2 bits (92), Expect = 1e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174 ||||| || |||||| ||||| ||||| ||||| | ||| | || || | || Sbjct 188826 TGAAGGGTTGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTGCGTCCATCTTCGAGCTGC 188767 Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 || ||||| || ||||| ||||||||||||| || | ||| || || ||| || || Sbjct 188766 TTGCCGGCGAAGATTAGTCGTTGTTGATCGGGAGGAATGCCCTCCTTATCCTGTATCTTG 188707 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 |||||| || | || || ||| | || || || || || || ||||| ||||| Sbjct 188706 GCCTTCACGTTGTCGATCGTGTCTGAAGACTCGACCTCCAAAGTGATCGTTTTGCCCGTG 188647 Query 38295 AAGGTTTTCACGAATATCTGCATG 38318 | ||| || || || || |||||| Sbjct 188646 AGGGTCTTAACAAAGATTTGCATG 188623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334945832473385