Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001700625.1_202016-08-08] 335 sequences; 41,818,685 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq47 194 2e-44 >seq47 Length=266373 Score = 194 bits (214), Expect = 2e-44 Identities = 388/568 (68%), Gaps = 9/568 (2%) Strand=Plus/Plus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || ||||| ||| || | |||||| || | ||| || | ||||| || |||| | Sbjct 37926 CAGGCGAAGTCGGTATGCATACCCTCATCACGACTGATGAGCTCGTTTGAGAACGCCAAG 37985 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 32780 || ||||||| |||||||| || | |||||| |||||||| || || ||||| |||||| Sbjct 37986 CCAGGCATTAATCCACGCTTCTTCATCCAAAAGATGGACGCGAAGGAGCCAGAGAAGAAA 38045 Query 32781 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC-ATAACCG-GCGCT-GTCATGT 32837 || ||||| || || |||||||| | || | ||| || | ||||| | | | |||| Sbjct 38046 ATGCCTTCAACAGCAGCAAAGGCTACGAGACGCTCGCCGAAAACCGAGTGTTCGTCACTG 38105 Query 32838 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 32897 ||||| ||||||| |||||||| || | ||||| || ||||| ||||||| | Sbjct 38106 ATCCAGCGCAGAGCCCACTCGGCCTTGCGCTTGATGCAAGGAATAGTCTCGATAGCATCA 38165 Query 32898 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATT 32957 || || | | ||| | ||||| | ||||| || || | |||| || | Sbjct 38166 AAAAGGAAATCACGTTCGACAGGGTCTTTGATGTATGTGTCGATGAGAAGAGAGTAAGTC 38225 Query 32958 TCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATC 33017 || || |||||||| || || || || || ||||||||||| | ||||| | | | Sbjct 38226 TCGGAGTGAATGTTCTCCATCATAATCTGGAACCCGTAGAAGCAACGTGCCTCAGCGACC 38285 Query 33018 TGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 33077 |||||||| | | || ||||| | ||| || || || || || ||| ||| ||| Sbjct 38286 TGTACTTCGTTCGAGAAGCGTTCGAGAAGATTCTCGTTGACAATGCCATCAGAGGCGGCA 38345 Query 33078 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT----AGTTTATTCCA 33133 || ||||| | ||| | || || || |||| ||| || | || ||||| Sbjct 38346 AAGAACGCGAGAACACGGGAGATGAAGAATCGTTCG-CTGTCATTCAGGCGGTTGTTCCA 38404 Query 33134 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 33193 |||| | ||||| |||| ||||| |||||| | ||||| || || ||||| ||||| Sbjct 38405 GTCATGAAGGTCTTTTGATAAATCCATCTCTTCCGCAGTCCAGAAAGAGGCCTCGGCCTT 38464 Query 33194 TTTATACATATTCCAGATGTCATGATAT 33221 || ||||| | ||| || | || |||| Sbjct 38465 CTTGTACATTTGCCATATCTGAT-ATAT 38491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633629346666000