Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001700625.1_202016-08-08] 335 sequences; 41,818,685 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq5 136 3e-27 seq38 129 5e-25 seq67 95.1 1e-14 >seq5 Length=946259 Score = 136 bits (150), Expect = 3e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| |||||||||||||| || ||||||| | || || |||||||| Sbjct 884039 AATGCAGATCTTTGTCAAGACTTTGACCGGAAAGACCATCACCTTGGAGGTCGAGTCGTC 883980 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||| || || || ||||| ||| ||| || || || || || || |||||||| Sbjct 883979 TGATACCATTGACAATGTGAAGGCAAAGATCCAGGATAAGGAGGGTATCCCTCCTGACCA 883920 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || |||| ||||| || || || ||||||||| |||||| | ||||| || Sbjct 883919 ACAACGTCTTATCTTTGCTGGAAAGCAGCTAGAAGATGGCCGCACTCTTTCGGATTATAA 883860 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| ||||||||||| || || ||| | || || Sbjct 883859 TATCCAAAAAGAATCGACTCTTCATCTTGTTCT 883827 Score = 127 bits (140), Expect = 2e-24 Identities = 154/207 (74%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||||||| || | ||||| | ||||| ||||| ||| Sbjct 883810 ATGCAGATCTTTGTGAAGACATTGACCGGAAAGACGATCACTCTTGAAGTCGAGTCTTCT 883751 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||||||||| || || | ||||| | ||| ||||||||||| ||||| || ||| Sbjct 883750 GACACTATCGA--CAATGTCAAGGCAAAGATTCAG-GACAAAGAAGGCATTCCTCCCGAC 883694 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||||| | || ||||| || || || || || |||| ||| || | || || Sbjct 883693 CAACAGCGTTTGATCTTTGCTGGAAAGCAGTTGGAGGATGGTCGTACGCTTTCTGACTAT 883634 Query 25176 AATATTCAAAAAGAATCCACGCTACAT 25202 || ||||| ||||| || || || ||| Sbjct 883633 AACATTCAGAAAGAGTCTACCCTTCAT 883607 >seq38 Length=308705 Score = 129 bits (142), Expect = 5e-25 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || | ||||| | || || ||||||||| Sbjct 188852 ATGCAGATCTTCGTCAAGACACTCACGGGAAAGACGATCACTCTTGAGGTTGAGTCGTCT 188911 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 |||||||| || || || ||| |||||| ||||| ||||| ||||| ||||||| Sbjct 188912 GACACTATTGA--CAATGTTAAGGCGAAAATCCAGGACAAGGAAGGTATTCCGCCTGACC 188969 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||| || | |||||||| ||||| || || || |||| |||||| | ||||||| Sbjct 188970 AACAACGTCTCATTTTTGCTGGCAAGCAGTTGGAGGATGGTCGCACGCTTTCTGATTACA 189029 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||||| ||||| || || || || | || || | || ||||||| Sbjct 189030 ATATTCAGAAAGAGTCAACCCTCCACCTTGTCCTTCGTCTTCGAGGAGG 189078 >seq67 Length=206472 Score = 95.1 bits (104), Expect = 1e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 25104 ATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACT 25163 ||||| ||||| |||||||| | ||||| || || |||||| | || |||| || ||| Sbjct 157835 ATTCCCCCTGATCAACAGCGACTCATTTTCGCTGGAAAACAACTTGAGGATGGACGTACT 157894 Query 25164 GTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || | |||||||| ||||| ||||||||||| || || |||||||| Sbjct 157895 CTGAGTGATTACAACATTCAGAAAGAATCCACCCTTCACTTAGTGCT 157941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433326230803025