Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001700625.1_202016-08-08] 335 sequences; 41,818,685 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq48 208 8e-49 seq47 159 4e-34 >seq48 Length=263890 Score = 208 bits (230), Expect = 8e-49 Identities = 389/561 (69%), Gaps = 13/561 (2%) Strand=Plus/Minus Query 93092 CACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAAT--GTTA 93149 ||||| || ||||||||||||||||| ||||| || | ||| || ||||| |||| Sbjct 116812 CACGCGAAATCGGTATGTAAACCTTCATCTCGGCTGATGAGCTCGTT--TGAATAAGTTA 116755 Query 93150 AACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaa 93209 || || | ||| || || ||||| | ||| || || ||||| || |||||||||| Sbjct 116754 GGCCAGGCATCAGGCCGCGCTTCTTTAACCAGAAAATGGAAGCGAACGACCCAGAAAAAA 116695 Query 93210 aTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGC 93269 | || || || || || || |||||||| | | || |||||| | || || | | Sbjct 116694 AGATTCCCTCGACAGCAGCGAATGCCACCAATCTCTCTGCAAAAGT-GCTTCGTTTGT-C 116637 Query 93270 TGAT--CCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGC 93327 ||| |||||| | ||||| |||||||| ||| || || |||| |||||| || || Sbjct 116636 AGATATCCATTTGAGGGCCCAGTCGGCTTTGCGCTTGATGCACGGTATTGTTTCTATTGC 116577 Query 93328 GTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATA 93387 || || || || | || | | ||| | |||||||||||| | |||||| || Sbjct 116576 GTCGAAGAGATATGCGCGTTGATTAAGATCCTTGACGTATGTATCGATAAGCAGAGAGTA 116517 Query 93388 CATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCG- 93446 |||||||||| || || ||||| |||||||| || || || | | || || | Sbjct 116516 AGTTTCAGAATGAACGTTTTCCATCATTATTTGGAACCCATAAAAGTAGCGCGCCTCAGC 116457 Query 93447 TGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATG 93506 || | |||||||| | ||||| | ||| | |||||||| || || ||||| || || | Sbjct 116456 TGCT-TGCACTTCGTTTGAAAAGCGCTCCAACAGATTTTCGTTCACGATACCGTCAGAGG 116398 Query 93507 CTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCA-TCTTTAA--GCTTAT 93563 | ||||| || || | | || | || ||||| ||| ||| | ||||| ||| | Sbjct 116397 CGGCAAAGAATGCAAGGACGTGGGTGATGAAATGACGCTCGTCATTGTTTAATCGCTCGT 116338 Query 93564 CCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTG 93623 ||| ||| ||||| | | || || | ||||| ||||| ||||||||||||| Sbjct 116337 TCCAGTCGACAAGATCATGAGTGAGGTCAATCTCTTCCGAGGTCCAGAACGATGCTTCTG 116278 Query 93624 CTTTTTTGTACATATCCCATA 93644 |||| |||||||| | ||||| Sbjct 116277 CTTTCTTGTACATCTGCCATA 116257 >seq47 Length=266373 Score = 159 bits (176), Expect = 4e-34 Identities = 374/560 (67%), Gaps = 7/560 (1%) Strand=Plus/Plus Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150 ||| || ||||||||||| | ||| || || || || | ||| || ||| | || Sbjct 37925 GCAGGCGAAGTCGGTATGCATACCCTCATCACGACTGATGAGCTCGTTTGAGAACGCCAA 37984 Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaa 93210 || || | | ||| || ||||| | |||||| || || || || ||||| || || Sbjct 37985 GCCAGGCATTAATCCACGCTTCTTCATCCAAAAGATGGACGCGAAGGAGCCAGAGAAGAA 38044 Query 93211 TATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCT 93270 || ||||| || || ||||| || || | ||| ||| | ||| | | | || Sbjct 38045 AATGCCTTCAACAGCAGCAAAGGCTACGAGACGCTCGCCGAAAACCGAGTGTTCGTCACT 38104 Query 93271 GATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTT 93330 |||||| | |||||| ||||| || ||| || ||||| | || |||||||| | Sbjct 38105 GATCCAGCGCAGAGCCCACTCGGCCTTGCGCTTGATGCAAGGAATAGTCTCGATAGCATC 38164 Query 93331 AAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACAT 93390 ||| ||| |||| || ||| | | ||| |||||||| ||||| | ||||| || | Sbjct 38165 AAAAAGGAAATCACGTTCGACAGGGTCTTTGATGTATGTGTCGATGAGAAGAGAGTAAGT 38224 Query 93391 TTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGAT 93450 || || || | |||||||| ||| ||||| |||||||| || | || || | || Sbjct 38225 CTCGGAGTGAATGTTCTCCATCATAATCTGGAACCCGTAGAAGCAACGTGCCTCAGCGAC 38284 Query 93451 CTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGC 93510 ||| ||||| | || || | || | ||||| || ||||| || ||||| || || || Sbjct 38285 CTGTACTTCGTTCGAGAAGCGTTCGAGAAGATTCTCGTTGACAATGCCATCAGAGGCGGC 38344 Query 93511 aaaaaaaGCCAATATATGCTTTAT--AAAATGTTTCTC-ATCATCTTTAAGC--TTATCC 93565 ||| || || | | | | || | ||| ||| | ||| || | || || | | Sbjct 38345 AAAGAACGCGAGAACACGGGAGATGAAGAATCGTTCGCTGTCA--TTCAGGCGGTTGTTC 38402 Query 93566 CAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCT 93625 || || || |||||||| | ||| | ||||| ||||||| || || || || || Sbjct 38403 CAGTCATGAAGGTCTTTTGATAAATCCATCTCTTCCGCAGTCCAGAAAGAGGCCTCGGCC 38462 Query 93626 TTTTTGTACATATCCCATAT 93645 || |||||||| | |||||| Sbjct 38463 TTCTTGTACATTTGCCATAT 38482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556858468145400