Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001700625.1_202016-08-08] 335 sequences; 41,818,685 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq38 176 8e-39 seq5 159 6e-34 seq3 89.7 9e-13 >seq38 Length=308705 Score = 176 bits (194), Expect = 8e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || || || | || | ||| || || ||||| || || ||||| || || || Sbjct 188850 CCTCCACGTAGACGAAGAACAAGGTGAAGGGTTGACTCCTTCTGAATGTTGTAGTCAGAA 188791 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| |||||||| || |||| |||||| ||||| ||| Sbjct 188790 AGGGTGCGTCCATCTTCGAGCTGCTTGCCGGCGAAGATTAGTCGTTGTTGATCGGGAGGA 188731 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||| || || ||||| ||||| ||| ||||| ||||||| || || || Sbjct 188730 ATGCCCTCCTTATCCTGTATCTTGGCCTTCACGTTGTCGATCGTGTCTGAAGACTCGACC 188671 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| ||||| ||||| |||||||||||||| || || || ||||| Sbjct 188670 TCCAAAGTGATCGTTTTGCCCGTGAGGGTCTTAACAAAGATTTGCAT 188624 Score = 163 bits (180), Expect = 5e-35 Identities = 163/210 (78%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 68253 ACCAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTC 68311 |||||| || || || ||||| || |||||||| |||||||| || || | ||||| || Sbjct 189289 ACCAAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGAAAGCGTGCGACCATCCTC 189230 Query 68312 TAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTG 68371 |||||||| || || || ||||| | || ||||| || |||||||| |||||||| || Sbjct 189229 CAACTGCTTGCCAGCAAAAATGAGACGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTG 189170 Query 68372 AATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTT 68431 ||||| ||||| || || |||||||| | || || || |||| || || || || Sbjct 189169 GATCTTCGCCTTTACATTGTCAATGGTGTCCGACGACTCAACCTCCAGAGTAATCGTCTT 189110 Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||| ||||||||||||||||| |||||||| Sbjct 189109 TCCTGTGAGGGTCTTGACGAAGATCTGCAT 189080 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| ||||| || | || | ||| || || |||||||| || || || ||||| || Sbjct 189078 CCTCCTCGAAGACGAAGGACAAGGTGGAGGGTTGACTCTTTCTGAATATTGTAATCAGAA 189019 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || |||||||| || || || ||||| | ||||||||| || ||| Sbjct 189018 AGCGTGCGACCATCCTCCAACTGCTTGCCAGCAAAAATGAGACGTTGTTGGTCAGGCGGA 188959 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||||||||| || || || ||||| || || || ||||| | || || || Sbjct 188958 ATACCTTCCTTGTCCTGGATTTTCGCCTTAACATTGTCAATAGTGTCAGACGACTCAACC 188899 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||| || ||||||||||| ||||||||||| |||||||| Sbjct 188898 TCAAGAGTGATCGTCTTTCCCGTGAGTGTCTTGACGAAGATCTGCAT 188852 Score = 89.7 bits (98), Expect = 9e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | || | ||| || |||||||||||||||||||| ||||| ||| Sbjct 188336 CCGCCACGAAGACGAAGGACTAGGTGGAGGGTGGACTCTTTTTGGATGTTGTAATCCGAG 188277 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | ||||| || ||||| || | | ||||||||| || ||| Sbjct 188276 AGAGTTCGTCCGTCCTCAAGTTGCTTTCCAGCGAAAATCAAACGTTGTTGGTCTGGAGGA 188217 Query 68355 ATGC 68358 |||| Sbjct 188216 ATGC 188213 >seq5 Length=946259 Score = 159 bits (176), Expect = 6e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | || | || || || || ||||||||||| |||||||| || Sbjct 883812 CCACCACGAAGACGGAGAACAAGATGAAGAGTCGATTCTTTTTGGATATTATAATCCGAA 883871 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||||| |||||| || || || || || | ||||||||| || || Sbjct 883872 AGAGTGCGGCCATCTTCTAGCTGCTTTCCAGCAAAGATAAGACGTTGTTGGTCAGGAGGG 883931 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||| || || ||||||||||| || || ||||| || | || || || Sbjct 883932 ATACCCTCCTTATCCTGGATCTTTGCCTTCACATTGTCAATGGTATCAGACGACTCGACC 883991 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 |||||||||||||| ||||| || | |||||||| || ||||||||| Sbjct 883992 TCCAAGGTGATGGTCTTTCCGGTCAAAGTCTTGACAAAGATCTGCATT 884039 Score = 154 bits (170), Expect = 3e-32 Identities = 161/210 (77%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 68253 ACCAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTC 68311 |||||| || || || |||||||| || |||||||| || || || || | ||||| || Sbjct 883601 ACCAAGATGAAGGGTAGACTCTTTCTGAATGTTATAGTCAGAAAGCGTACGACCATCCTC 883660 Query 68312 TAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTG 68371 |||||||| || || || || | | ||||||||||| ||||||||||| ||||| || Sbjct 883661 CAACTGCTTTCCAGCAAAGATCAAACGCTGTTGGTCGGGAGGAATGCCTTCTTTGTCCTG 883720 Query 68372 AATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTT 68431 ||||||||||||||| ||||| ||||| | || || ||||| | ||||| || || Sbjct 883721 AATCTTTGCCTTGACATTGTCGATAGTGTCAGAAGACTCGACTTCAAGAGTGATCGTCTT 883780 Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||| || | ||||| || || |||||||| Sbjct 883781 TCCGGTCAATGTCTTCACAAAGATCTGCAT 883810 >seq3 Length=995293 Score = 89.7 bits (98), Expect = 9e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 |||||||| || || ||||| |||||||| ||||||||||| | || || || ||| Sbjct 452287 CCTTCCTTATCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCCACCTCC 452346 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | |||||| || || ||||| ||||||||||| || || ||||| Sbjct 452347 AGGGTGATTGTCTTACCCGTTAGGGTCTTGACAAAAATTTGCAT 452390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921618540706200