Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001700625.1_202016-08-08] 335 sequences; 41,818,685 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq5 113 4e-20 seq67 109 5e-19 seq38 89.7 4e-13 >seq5 Length=946259 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| ||||| |||||||| || || | |||||| ||| || | || || ||| Sbjct 883614 GTAGACTCTTTCTGAATGTTATAGTCAGAAAGCGTACGACCATCCTCCAACTGCTTTCCA 883673 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | |||||||||||| |||||||||||||||||||| ||||||| || Sbjct 883674 GCAAAGATCAAACGCTGTTGGTCGGGAGGAATGCCTTCTTTGTCCTGAATCTTTGCCTTG 883733 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||||| | || ||||| || | || | ||| || ||||||| || Sbjct 883734 ACATTGTCGATAGTGTCAGAAGACTCGACTTCAAGAGTGATCGTCTTTCCGGTCAATGTC 883793 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 883794 TTCACAAAGATCTGCAT 883810 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | ||| | ||| | || ||||||||||| || || ||||| Sbjct 883809 ATCCCACCACGAAGACGGAGAACAAGATGAAGAGTCGATTCTTTTTGGATATTATAATCC 883868 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| || |||||| || || || ||||| |||| ||||| |||||||| ||| Sbjct 883869 GAAAGAGTGCGGCCATCTTCTAGCTGCTTTCCAGCAAAGATAAGACGTTGTTGGTCAGGA 883928 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || || || |||||| || | | |||| ||| || | || ||| Sbjct 883929 GGGATACCCTCCTTATCCTGGATCTTTGCCTTCACATTGTCAATGGTATCAGACGACTCG 883988 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | || || ||||||| ||| || ||||| |||||||| Sbjct 883989 ACCTCCAAGGTGATGGTCTTTCCGGTCAAAGTCTTGACAAAGATCTGCAT 884038 >seq67 Length=206472 Score = 109 bits (120), Expect = 5e-19 Identities = 98/123 (80%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| || | || ||||| || | || |||||||| |||||||||||||| || Sbjct 157957 ACCACCACGAAGACGCAGCACTAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAATCACT 157898 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||||| ||| ||||||||||| |||||| | ||||| |||||||| || || || Sbjct 157897 CAGAGTACGTCCATCCTCAAGTTGTTTTCCAGCGAAAATGAGTCGCTGTTGATCAGGGGG 157838 Query 114275 AAT 114277 ||| Sbjct 157837 AAT 157835 >seq38 Length=308705 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || |||||||| | | ||| | || | || || || || ||||||||||| || Sbjct 188853 ATGCCTCCACGTAGACGAAGAACAAGGTGAAGGGTTGACTCCTTCTGAATGTTGTAGTCA 188794 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || |||||| || || || || ||| |||| || || ||||| || ||| Sbjct 188793 GAAAGGGTGCGTCCATCTTCGAGCTGCTTGCCGGCGAAGATTAGTCGTTGTTGATCGGGA 188734 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||| || || || ||||| || | | || | ||||| | || ||| Sbjct 188733 GGAATGCCCTCCTTATCCTGTATCTTGGCCTTCACGTTGTCGATCGTGTCTGAAGACTCG 188674 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386 || |||| || | ||||||||| || || || || ||||| || |||||| || Sbjct 188673 ACCTCCAAAGTGATCGTTTTGCCCGTGAGGGTCTTAACAAAGATTTGCATGCCT 188620 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||||||| | || ||| ||| || | || || ||| Sbjct 189276 GTCGACTCCTTCTGGATGTTGTAATCGGAAAGCGTGCGACCATCCTCCAACTGCTTGCCA 189217 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || | ||||||||||| ||||| || |||||||| || ||||| ||||| ||| Sbjct 189216 GCAAAAATGAGACGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTT 189157 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| | || || || |||| || | ||| || || || || || Sbjct 189156 ACATTGTCAATGGTGTCCGACGACTCAACCTCCAGAGTAATCGTCTTTCCTGTGAGGGTC 189097 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 189096 TTGACGAAGATCTGCAT 189080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420132684670020