Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001700625.1_202016-08-08] 335 sequences; 41,818,685 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq5 154 3e-32 seq38 123 6e-23 seq47 102 2e-16 seq48 84.2 5e-11 >seq5 Length=946259 Score = 154 bits (170), Expect = 3e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || ||||||| || |||||||||||||||||| || | Sbjct 883812 CCACCACGAAGACGGAGAACAAGATGAAGAGTCGATTCTTTTTGGATATTATAATCCGAA 883871 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || ||||||| || ||||| || ||||| ||||| ||||| | ||| Sbjct 883872 AGAGTGCGGCCATCTTCTAGCTGCTTTCCAGCAAAGATAAGACGTTGTTGGTCAGGAGGG 883931 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || ||||||||||| || || ||||| || || || | ||| ||| || || Sbjct 883932 ATACCCTCCTTATCCTGGATCTTTGCCTTCACATTGTCAATGGTATCAGACGACTCGACC 883991 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || | ||||| ||||| ||||||| ||||||||| || ||||||||| Sbjct 883992 TCCAAGGTGATGGTCTTTCCGGTCAAAGTCTTGACAAAGATCTGCATT 884039 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| || || |||||||| | ||||| || || || || || || ||||| || ||| Sbjct 883620 TCTTTCTGAATGTTATAGTCAGAAAGCGTACGACCATCCTCCAACTGCTTTCCAGCAAAG 883679 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| ||||||||| || || |||||||| ||||| || || || || || || Sbjct 883680 ATCAAACGCTGTTGGTCGGGAGGAATGCCTTCTTTGTCCTGAATCTTTGCCTTGACATTG 883739 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || |||| || || || ||||| || ||||||||||| ||||||| ||||| || Sbjct 883740 TCGATAGTGTCAGAAGACTCGACTTCAAGAGTGATCGTCTTTCCGGTCAATGTCTTCACA 883799 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 883800 AAGATCTGCAT 883810 >seq38 Length=308705 Score = 123 bits (136), Expect = 6e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| || ||||| || || | |||||||| || || || || || || || || || Sbjct 189042 TCTTTCTGAATATTGTAATCAGAAAGCGTGCGACCATCCTCCAACTGCTTGCCAGCAAAA 188983 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || ||||| ||||| | || || ||||| || |||||||||||||| || || || Sbjct 188982 ATGAGACGTTGTTGGTCAGGCGGAATACCTTCCTTGTCCTGGATTTTCGCCTTAACATTG 188923 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || |||| || ||| || || || || ||||||||||| || || || ||||||||| Sbjct 188922 TCAATAGTGTCAGACGACTCAACCTCAAGAGTGATCGTCTTTCCCGTGAGTGTCTTGACG 188863 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 188862 AAGATCTGCAT 188852 Score = 105 bits (116), Expect = 2e-17 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || || |||| |||||||| || || || || || || || || || Sbjct 189270 TCCTTCTGGATGTTGTAATCGGAAAGCGTGCGACCATCCTCCAACTGCTTGCCAGCAAAA 189211 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || |||||||| || | || || || || || |||||||| ||||| || || || Sbjct 189210 ATGAGACGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTTACATTG 189151 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || ||| || || || || || |||||||| || || || ||||||||| Sbjct 189150 TCAATGGTGTCCGACGACTCAACCTCCAGAGTAATCGTCTTTCCTGTGAGGGTCTTGACG 189091 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 189090 AAGATCTGCAT 189080 >seq47 Length=266373 Score = 102 bits (112), Expect = 2e-16 Identities = 137/188 (73%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 269150 TGATCGGTATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCT 269209 ||||||| ||||| || | ||| |||||||||||| ||||| || ||||| | Sbjct 37759 TGATCGGCATGAACGCGACATTGATGTGTCAATATATCGAGTTCGTTGCCGATCGACTAC 37700 Query 269210 TCACGGCACTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAAC 269269 || || ||||| | |||| ||||||| |||| ||| ||||||| ||||||||| Sbjct 37699 TCGTCGCTCTCGGCAACAAGAAGTTGTACAACTCGACGAACCCCTTCGACTTTATGGACA 37640 Query 269270 TAATTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTA-TCAACGT 269328 | || ||||| |||| ||||| ||||| || || ||||| || ||| || |||| | Sbjct 37639 TGATCTCGCTTCAAGGGAAGACCAACTTTTTTGAGAAGCGGGTGTCCGATTACTCAAAG- 37581 Query 269329 CCTGGTGT 269336 ||||||| Sbjct 37580 GCTGGTGT 37573 >seq48 Length=263890 Score = 84.2 bits (92), Expect = 5e-11 Identities = 189/281 (67%), Gaps = 6/281 (2%) Strand=Plus/Plus Query 268483 CTGTGGAACATGTACAAGAAGGCAGTGGCAACCTTTTGGACCACCGAGGAAGTT--CCTC 268540 || ||| | ||||||||||| |||| ||| | || |||||| | || || || |||| Sbjct 116256 CTATGGCAGATGTACAAGAAAGCAGAAGCATCGTTCTGGACCTCGGAAGAGATTGACCTC 116315 Query 268541 TTAACGCA-GACGTTGCAGACTGGCGTGAGAAACTGAACAACGATGAACGACACTTCATC 268599 || || || ||| |||||| ||| | | ||||| || || || || |||||| Sbjct 116316 ---ACTCATGATCTTGTCGACTGGAACGAGCGATTAAACAATGACGAGCGTCATTTCATC 116372 Query 268600 AAACATATTCTGGGGTTCTTTGCAGGCTCCGACGGTATCGTGATGGAAAATCTTCAGACA 268659 | || | || | |||||||| | ||| ||||||||||||| |||||||| | Sbjct 116373 ACCCACGTCCTTGCATTCTTTGCCGCCTCTGACGGTATCGTGAACGAAAATCTGTTGGAG 116432 Query 268660 AACTTTGGTGTCGAAGTGATGGCACCAGAGGCACGACAATTCTATGCATATCAAACATTC 268719 |||| ||||||| ||| | ||||| || | || |||| | |||| | | Sbjct 116433 CGCTTTTCAAACGAAGTGCAAGCAGCTGAGGCGCGCTACTTTTATGGGTTCCAAATAATG 116492 Query 268720 AACGAATCCGTTCATAGTGAAATGTATGCACTTCTTATCGA 268760 | ||| ||||||| ||||| || | || |||||||| Sbjct 116493 ATGGAAAACGTTCATTCTGAAACTTACTCTCTGCTTATCGA 116533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179649336702130