Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001700625.1_202016-08-08] 335 sequences; 41,818,685 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq5 87.8 2e-12 seq47 86.0 6e-12 seq38 84.2 2e-11 >seq5 Length=946259 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| || |||||||| ||||| | ||||| ||||| | || || || | | Sbjct 883617 GACTCTTTCTGAATGTTATAGTCAGAAAGCGTACGACCATCCTCCAACTGCTTTCCAGCA 883676 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTTTA 138538 |||| | |||||||||||| ||||| || ||||||||||| ||| | |||| || Sbjct 883677 AAGATCAAACGCTGTTGGTCGGGAGGAATGCCTTCTTTGTC-CTGAATCTTTGCCTTGAC 883735 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| || | ||||| | ||||| || || | || | ||| || || |||| || | Sbjct 883736 ATTG-TCGATAGTGTCAGAAGACTCGACTTCAAGAGTGATCGTCTTTCCGGTCAATGTCT 883794 Query 138599 TTACAAAAATCTGCAT 138614 | ||||| |||||||| Sbjct 883795 TCACAAAGATCTGCAT 883810 >seq47 Length=266373 Score = 86.0 bits (94), Expect = 6e-12 Identities = 138/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 52638 TTTTTTACGGCCGCGCTGCCGGTCGAGCT-GCTGGGCATGAACGCGCAGTCCATGTGCGA 52696 |||||| | | |||||| || || |||| | | |||||||||||| | ||||| | Sbjct 37787 TTTTTTCCAGACGCGCTTCCTGTA-AGCTTGATCGGCATGAACGCGACATTGATGTGTCA 37729 Query 52697 GTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCA-AAGTACTTCA 52755 || |||||||| || || ||||| || | || ||||| || | | |||| | || Sbjct 37728 ATATATCGAGTTCGTTGCCGATCGACTACTCGTCGCTCTCGG-CAACAAGAAGTTGTACA 37670 Query 52756 ACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTT 52815 || | || || || || |||||| ||| || |||||| | || ||||||||||||| Sbjct 37669 ACTCGACGAACCCCTTCGACTTTATGGACATGATCTCGCTTCAAGGGAAGACCAACTTTT 37610 Query 52816 TCGAGAAGCGAGT 52828 | |||||||| || Sbjct 37609 TTGAGAAGCGGGT 37597 >seq38 Length=308705 Score = 84.2 bits (92), Expect = 2e-11 Identities = 161/234 (69%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | ||| | ||| | || | | |||||||||| |||||||||||||| Sbjct 188851 GCCTCCACGTAGACGAAGAACAAGGTGAAGGGTTGACTCCTTCTGAATGTTGTAGTCAGA 188792 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || || || ||||| || || |||| ||||||| || ||||| || ||||| Sbjct 188791 AAGGGTGCGTCCATCTTCGAGCTGCTTGCCGGCGAAGATTAGTCGTTGTTGATCGGGAGG 188732 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCC 138564 || || || || || || | || | || | ||| || | ||||| | ||||| Sbjct 188731 AATGCCCTCCTTATC-CTGTATCTTGGCCTTCACGTTG-TCGATCGTGTCTGAAGACTCG 188674 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 ||||| | || | |||||| || || || || || ||||| || |||||| || Sbjct 188673 ACCTCCAAAGTGATCGTTTTGCCCGTGAGGGTCTTAACAAAGATTTGCATGCCT 188620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496260321901200