Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001700625.1_202016-08-08] 335 sequences; 41,818,685 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq5 109 5e-19 seq38 86.0 6e-12 >seq5 Length=946259 Score = 109 bits (120), Expect = 5e-19 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 45123 AGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTA 45182 || |||| || ||||| || || || || || || || ||||| || | || | Sbjct 883595 AGACTCACCA--AGATGAAGGGTAGACTCTTTCTGAATGTTATAGTCAGAAAGCGTACGA 883652 Query 45183 GAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCT 45242 ||| ||||| || ||||| || | ||||| || || ||||| || |||||||||||| Sbjct 883653 CCATCCTCCAACTGCTTTCCAGCAAAGATCAAACGCTGTTGGTCGGGAGGAATGCCTTCT 883712 Query 45243 TTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTA 45302 || || ||||| ||| |||| || | ||||| |||||||||||||| ||||| Sbjct 883713 TTGTCCTGAATCTTTGCCTTGACATTGTCGATAGTGTCAGAAGACTCGACTTCAAGAGTG 883772 Query 45303 ACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 | ||| || ||||| | || || ||||| || |||||| Sbjct 883773 ATCGTCTTTCCGGTCAATGTCTTCACAAAGATCTGCATC 883811 >seq38 Length=308705 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| || || | | || || || || ||||| ||||| || || || || || Sbjct 188853 ATGCCTCCACGTAGACGAAGAACAAGGTGAAGGGTTGACTCCTTCTGAATGTTGTAGTCA 188794 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| || | || || || ||| | || | |||||| || || || Sbjct 188793 GAAAGGGTGCGTCCATCTTCGAGCTGCTTGCCGGCGAAGATTAGTCGTTGTTGATCGGGA 188734 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 |||||||| || ||||| || || || || | || | || | ||||| |||||||| Sbjct 188733 GGAATGCCCTCCTTATCCTGTATCTTGGCCTTCA-CGTTGTCGATCGTGTCTGAAGACTC 188675 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| || | ||| | ||||||||| || || || || ||||| |||||||| Sbjct 188674 GACCTCCAAAGTGATCGTTTTGCCCGTGAGGGTCTTAACAAAGATTTGCAT 188624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452001307236600