Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001700625.1_202016-08-08] 335 sequences; 41,818,685 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq38 129 7e-25 seq5 86.0 7e-12 >seq38 Length=308705 Score = 129 bits (142), Expect = 7e-25 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| | || ||| | || || || | || |||||| || || |||||||| | Sbjct 188852 TGCCTCCACGTAGACGAAGAACAAGGTGAAGGGTTGACTCCTTCTGAATGTTGTAGTCAG 188793 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| | || |||||||||||||||||||| || | || || || |||| | Sbjct 188792 AAAGGGTGCGTCCATCTTCGAGCTGCTTGCCGGCGAAGATTAGTCGTTGTTGATCGGGAG 188733 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCC-ACCGTGTCGCTCGATTCC 46543 | | || |||||| ||| ||||| ||| | ||| | | | |||||| || || Sbjct 188732 GAATGCCCTCCTTATCCTGTATCTTGGCCTTCA-CGTTGTCGATCGTGTCTGAAGACTCG 188674 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||| ||||| ||||||||||| || || ||||||||||||||||| Sbjct 188673 ACCTCCAAAGTGATCGTTTTGCCCGTGAGGGTCTTAACAAAGATTTGCAT 188624 Score = 104 bits (114), Expect = 3e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| ||||| || ||||| | || || | ||||||||| || || Sbjct 189271 CTCCTTCTGGATGTTGTAATCGGAAAGCGTGCGACCATCCTCCAACTGCTTGCCAGCAAA 189212 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | ||| | || |||||||||| ||||||| ||| | | Sbjct 189211 AATGAGACGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTTACATT 189152 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | ||||| ||| || || |||| || || || || || || || || || || Sbjct 189151 GTCAATGGTGTCCGACGACTCAACCTCCAGAGTAATCGTCTTTCCTGTGAGGGTCTTGAC 189092 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 189091 GAAGATCTGCAT 189080 >seq5 Length=946259 Score = 86.0 bits (94), Expect = 7e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 || ||||||||||| || || || |||||||| | || || |||||||| || || || Sbjct 883848 TCTTTTTGGATATTATAATCCGAAAGAGTGCGGCCATCTTCTAGCTGCTTTCCAGCAAAG 883907 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | || || ||||| | || | | |||||| ||| |||||| ||| | | Sbjct 883908 ATAAGACGTTGTTGGTCAGGAGGGATACCCTCCTTATCCTGGATCTTTGCCTTCACATTG 883967 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | || || ||| || || |||| |||||||| || || |||| || || ||| Sbjct 883968 TCAATGGTATCAGACGACTCGACCTCCAAGGTGATGGTCTTTCCGGTCAAAGTCTTGACA 884027 Query 46583 AAGATTTGCATT 46594 ||||| |||||| Sbjct 884028 AAGATCTGCATT 884039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565236033064200