Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001700625.1_202016-08-08] 335 sequences; 41,818,685 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq34 131 2e-25 seq47 87.8 2e-12 >seq34 Length=329079 Score = 131 bits (144), Expect = 2e-25 Identities = 319/477 (67%), Gaps = 10/477 (2%) Strand=Plus/Plus Query 112506 AAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATAGAAAT 112565 |||||||| || ||||||||||| ||| | ||||| || | || |||||| | || Sbjct 278087 AAACTCCATGATGTTACGAAAACGGTCGCTTTCAACCTCAATCGCGTCATTGATCGCAAC 278146 Query 112566 TTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTC 112622 | |||||| | |||| || ||| |||||| ||| | ||||||| ||||| || Sbjct 278147 TACTACCCCATCCCTGAG---GCCCGTCGATCTAACATGCGTAACCGTCCCATTGGAATC 278203 Query 112623 GGTGTCCAAGGTCTCGCGGATGTATTCAT-TCTTTGTCGCCACGCATTTGATTCCGACGA 112681 ||||| ||||||||||| || | ||||| | ||| | | | ||||| || ||| Sbjct 278204 GGTGTTCAAGGTCTCGCTGACGCCTTCATGGCATTGAAGATGC-CTTTTGACTCGCCCGA 278262 Query 112682 AGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAGGCGAG 112741 ||| |||||| |||| || || || |||||||| || || | |||| ||||||||| Sbjct 278263 AGCCAAGGAACTCAACACGAAGATTTTCGAGACAATTTACCATGGCGCTTGTGAGGCGAG 278322 Query 112742 TTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACA 112801 || || |||| || ||||||||||| || || | |||| ||| ||| || Sbjct 278323 TTGCGAAATGGCGAAGACGGATGGTCCATACGAGACGTGGATGGGTAGTCCTGCTCAGCA 278382 Query 112802 AGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGC-TTCACTACGACTGGGACG 112860 |||| | || || ||| | |||| || | ||| | | || || |||||| | Sbjct 278383 AGGGCAATTGCAGTTCGATCTATGGG-GTGTTACACCTACCGATCTCTGGGACTGGAATA 278441 Query 112861 CTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGC 112920 | | ||||| |||| || | || | | ||| || | | |||||||||| Sbjct 278442 CGTTGAAGGAGAGCATTTCTAAGTATGGAATGAGGAACTCGCTGCTTACTGCACCAATGC 278501 Query 112921 CAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGA 112977 | || ||||| || || || | || || ||||||||||| || ||||||| Sbjct 278502 CTACTGCCTCTACAAGCCAGATGCTCGGCTTCAACGAATGCTTTGAGCCTTACACGA 278558 Score = 84.2 bits (92), Expect = 3e-11 Identities = 156/227 (69%), Gaps = 9/227 (4%) Strand=Plus/Plus Query 111903 GGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCG 111962 || || ||||| | || |||||||| | ||||||||||| | | || || || || Sbjct 277370 GGCACGAATGGGTACTCGAATGGTATTGTGCCAATGCTTCGGGCGTACAATGCTACTGCA 277429 Query 111963 CGCTATGTAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAG 112016 || ||||| |||||| ||| ||||| | ||| || |||| ||||||| || Sbjct 277430 CGATATGTCGACCAAGGTGGTAACAAGCGTC-CTGGGG--CTTTCGCTATCTATCTCGAA 277486 Query 112017 CCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAG 112076 || ||||| || |||||| | | | | | || ||| | || || || | ||||| Sbjct 277487 CCTTGGCATGCTGATATCTTCGCGATGATCGATTTGAGGAAGAATCATGGCAAAGAGGAA 277546 Query 112077 GCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTT 112123 | ||| ||| ||| | |||| ||||| |||||||| |||||||| Sbjct 277547 GTGCGCGCCCGTGATTTATTCTATGCTCTATGGATTCCGGATCTCTT 277593 >seq47 Length=266373 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/136 (76%), Gaps = 4/136 (3%) Strand=Plus/Minus Query 102180 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCG-C 102238 ||||| ||| | || ||||| |||||| || || ||||||||||| |||||| ||| | Sbjct 38080 GAGCGTCTCGTAGCCTTTGCTGCTGTTGAAGGCATTTTCTTCTCTGGCTCCTTC-GCGTC 38022 Query 102239 TATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGC-TTCTCCAACGAGCTTA 102297 || | |||| | |||||||| || | ||||| || || || ||||| |||||||| | Sbjct 38021 CATCTTTTGGATGAAGAAGCGTGGATTAATGCCTGG-CTTGGCGTTCTCAAACGAGCTCA 37963 Query 102298 TCTCTCGTGACGAGGG 102313 || |||||| ||||| Sbjct 37962 TCAGTCGTGATGAGGG 37947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620739800641200