Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001700625.1_202016-08-08] 335 sequences; 41,818,685 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq38 105 4e-18 seq5 95.1 8e-15 >seq38 Length=308705 Score = 105 bits (116), Expect = 4e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| ||||| |||||| | ||| |||| || ||||| || ||||| || Sbjct 188814 TCCTTCTGAATGTTGTAGTCAGAAAGGGTGCGTCCATCTTCGAGCTGCTTGCCGGCGAAG 188755 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 ||||||||||| || || | || | |||||||| || ||||| || ||| Sbjct 188754 ATTAGTCGTTGTTGATCGGGAGGAATGCCCTCCTTATCCTGTATCTTGGCCTTCACGTTG 188695 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || | ||| || || | || || ||||| |||||||| ||||| ||| Sbjct 188694 TCGATCGTGTCTGAAGACTCGACCTCCAAAGTGATCGTTTTGCCCGTGAGGGTCTTAACA 188635 Query 34971 AAGATCTGCAT 34981 ||||| ||||| Sbjct 188634 AAGATTTGCAT 188624 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 ||||||||||| || || || ||||| | || |||| |||| ||| || || ||||| Sbjct 189042 TCTTTCTGAATATTGTAATCAGAAAGCGTGCGACCATCCTCCAACTGCTTGCCAGCAAAA 188983 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || ||||| ||||| |||| | || |||||||| || ||| || || Sbjct 188982 ATGAGACGTTGTTGGTCAGGCGGAATACCTTCCTTGTCCTGGATTTTCGCCTTAACATTG 188923 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| | |||||| || | || || || ||||||||||| ||||| || Sbjct 188922 TCAATAGTGTCAGACGACTCAACCTCAAGAGTGATCGTCTTTCCCGTGAGTGTCTTGACG 188863 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 188862 AAGATCTGCAT 188852 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| || || ||||| | || |||| |||| ||| || || ||||| Sbjct 189270 TCCTTCTGGATGTTGTAATCGGAAAGCGTGCGACCATCCTCCAACTGCTTGCCAGCAAAA 189211 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | ||||||||||| |||||| || || || Sbjct 189210 ATGAGACGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTTAC--AT 189153 Query 34911 GCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | || || | ||| | |||||| || | || || || ||||| ||||| ||||| Sbjct 189152 --TGTCAATGGTGTCCGACGACTCAACCTCCAGAGTAATCGTCTTTCCTGTGAGGGTCTT 189095 Query 34967 CACAAAGATCTGCATA 34982 || |||||||||||| Sbjct 189094 GACGAAGATCTGCATA 189079 >seq5 Length=946259 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 |||||| || || ||||| |||||||| | || |||| || ||||| ||||| ||||| Sbjct 883847 TTCTTTTTGGATATTATAATCCGAAAGAGTGCGGCCATCTTCTAGCTGCTTTCCAGCAAA 883906 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || ||||| ||||| | || | |||||||| || ||||| || || Sbjct 883907 GATAAGACGTTGTTGGTCAGGAGGGATACCCTCCTTATCCTGGATCTTTGCCTTCACATT 883966 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | ||| | ||| || || | ||| ||||| ||||| || | |||||| || Sbjct 883967 GTCAATGGTATCAGACGACTCGACCTCCAAGGTGATGGTCTTTCCGGTCAAAGTCTTGAC 884026 Query 34970 AAAGATCTGCAT 34981 |||||||||||| Sbjct 884027 AAAGATCTGCAT 884038 Score = 93.3 bits (102), Expect = 3e-14 Identities = 139/195 (71%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||||||||||||||| ||||| | || |||| |||| ||| ||||| ||||| Sbjct 883620 TCTTTCTGAATGTTATAGTCAGAAAGCGTACGACCATCCTCCAACTGCTTTCCAGCAAAG 883679 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | || || ||||| | || | || || ||||| |||||| ||||| || Sbjct 883680 ATCAAACGCTGTTGGTCGGGAGGAATGCCTTCTTTGTCCTGAATCTTTGCCTTGAC--AT 883737 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||| ||| | ||| || || | || || || ||||| || | ||||| Sbjct 883738 --TGTCGATAGTGTCAGAAGACTCGACTTCAAGAGTGATCGTCTTTCCGGTCAATGTCTT 883795 Query 34967 CACAAAGATCTGCAT 34981 ||||||||||||||| Sbjct 883796 CACAAAGATCTGCAT 883810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324632274581880