Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001700625.1_202016-08-08] 335 sequences; 41,818,685 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq48 132 5e-26 >seq48 Length=263890 Score = 132 bits (146), Expect = 5e-26 Identities = 366/558 (66%), Gaps = 5/558 (1%) Strand=Plus/Minus Query 18960 ACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAA 19019 ||| || ||||| ||||| || || |||| || || | || || ||| | |||| Sbjct 116813 ACACGCGAAATCGGTATGTAAACCTTCATCTCGGCTGATGAGCTCGTTTGAATAAGTTAG 116754 Query 19020 ACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAA 19079 ||||||||||| || | || ||||||||||| || ||||| || || |||||||| || Sbjct 116753 GCCAGGCATCAGGCCGCGCTTCTTTAACCAGAAAATGGAAGCGAACGACCCAGAAAAAAA 116694 Query 19080 TATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATG 19139 || || || || || || || || || | ||| ||| || || | || || || | | Sbjct 116693 GATTCCCTCGACAGCAGCGAATGCCACCAATCTCTCTGCAAAAGT-GCTTCGTTTGTCAG 116635 Query 19140 A-ATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAAT 19198 | |||||||| || ||||| || || || || | || || ||||| ||||| | | Sbjct 116634 ATATCCATTTGAGGGCCCAGTCGGCTTTGCGCTTGATGCACGGTATTGTTTCTATTGCGT 116575 Query 19199 TAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACA 19258 || ||||| || | || ||| || || |||| ||| || | | | ||| Sbjct 116574 CGAAGAGATATGCGCGTTGATTAAGATCCTTGACGTATGTATCGATAAGCAGAGAGTAAG 116515 Query 19259 TTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTA 19318 |||| ||||||| ||||| || || || || || ||||| | | || || | | Sbjct 116514 TTTCAGAATGAACGTTTTCCATCATTATTTGGAACCCATAAAAGTAGCGCGCCTCAGCTG 116455 Query 19319 TCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTG 19378 || ||||| | |||| | || | || |||||| || || || || ||| || | Sbjct 116454 CTTGCACTTCGTTTGAAAAGCGCTCCAACAGATTTTCGTTCACGATACCGTCAGAGGCGG 116395 Query 19379 CAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAAT---GTATTCC 19435 |||| ||||| | || || | || ||||| || || | ||||| |||| Sbjct 116394 CAAAGAATGCAAGGACGTGGGTGATGAAATGACGCTCGTCATTGTTTAATCGCTCGTTCC 116335 Query 19436 AATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTT 19495 | || || ||| | || | || | ||||| ||||| || || || ||||||| Sbjct 116334 AGTCGACAAGATCATGAGTGAGGTCAATCTCTTCCGAGGTCCAGAACGATGCTTCTGCTT 116275 Query 19496 TTTTATACATGTTCCATA 19513 | || ||||| | ||||| Sbjct 116274 TCTTGTACATCTGCCATA 116257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562106446169400