Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001700625.1_202016-08-08] 335 sequences; 41,818,685 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq47 172 1e-37 seq48 152 1e-31 >seq47 Length=266373 Score = 172 bits (190), Expect = 1e-37 Identities = 381/567 (67%), Gaps = 7/567 (1%) Strand=Plus/Plus Query 48123 AGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGA 48182 |||| | |||||| ||||| | |||| || || || || ||||||||| |||| |||| Sbjct 37918 AGAGAAGGCAGGCGAAGTCGGTATGCATACCCTCATCACGACTGATGAGCTCGTTTGAGA 37977 Query 48183 A-GCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCA 48241 | || || |||||||| | || | || || | ||| || || | |||||| |||||| Sbjct 37978 ACGCCAAG-CCAGGCATTAATCCACGCTTCTTCATCCAAAAGATGGACGCGAAGGAGCCA 38036 Query 48242 GAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTC 48301 |||||||| ||||| || || || || || || ||| | ||| |||||| | || Sbjct 38037 GAGAAGAAAATGCCTTCAACAGCAGCAAAGGCTACGAGACGCTCGCCGAAAACCGAGTGT 38096 Query 48302 TTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCT 48361 | ||| ||||||| || ||||| || ||||| ||||||||| || || ||||| Sbjct 38097 TCGTCACTGATCCAGCGCAGAGCCCACTCGGCCTTGCGCTTGATGCAAGGAATAGTCTCG 38156 Query 48362 ATGGCCCGGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTT 48421 || || || || | | || | | ||| | || || || || Sbjct 38157 ATAGCATCAAAAAGGAAATCACGTTCGACAGGGTCTTTGATGTATGTGTCGATGAGAAGA 38216 Query 48422 GCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCC 48481 | ||| |||| ||||| | ||||| || |||||||||||||||||| | ||| Sbjct 38217 GAGTAAGTCTCGGAGTGAATGTTCTCCATCATAATCTGGAACCCGTAGAAGCAACGTGCC 38276 Query 48482 TCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCT 48541 ||| ||||| ||||| | ||||| | || || |||||||| ||||| || ||||| Sbjct 38277 TCAGCGACCTGTACTTCGTTCGAGAAGCGTTCGAGAAGATTCTCGTTGACAATGCCATCA 38336 Query 48542 GAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGC- 48600 || || |||||||| || || ||| | | ||| || ||| ||| | || || Sbjct 38337 GAGGCGGCAAAGAACGCGAGAACACGGGAGATGAAGAATCGTTCGCTGTCATTCAG-GCG 38395 Query 48601 ---ATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGC 48657 |||||| | || | |||||| | |||| |||||| |||||||||| || || Sbjct 38396 GTTGTTCCAGTCATGAAGGTCTTTTGATAAATCCATCTCTTCCGCAGTCCAGAAAGAGGC 38455 Query 48658 GAGTGCTTTTTTGTACATGCCCCATAT 48684 || || |||||||| |||||| Sbjct 38456 CTCGGCCTTCTTGTACATTTGCCATAT 38482 >seq48 Length=263890 Score = 152 bits (168), Expect = 1e-31 Identities = 362/543 (67%), Gaps = 7/543 (1%) Strand=Plus/Minus Query 48146 TGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCC 48205 || || ||||| || |||||||||||| |||| || | || |||||||| | || Sbjct 116797 TGTAAACCTTCATCTCGGCTGATGAGCTCGTTTGAATAAGTTAGGCCAGGCATCAGGCCG 116738 Query 48206 CTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCC 48265 | || || | ||||||||| | ||||| || ||||| || ||||| ||||| || || Sbjct 116737 CGCTTCTTTAACCAGAAAATGGAAGCGAACGACCCAGAAAAAAAGATTCCCTCGACAGCA 116678 Query 48266 GCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTC--TTGTCTGAGATCCAGGAAAGCG 48323 ||||| || | |||||| | |||| || ||| ||||| || ||||| || | Sbjct 116677 GCGAATGCCACCAATCTCTCTGCAAAAG-TGC-TTCGTTTGTCAGATATCCATTTGAGGG 116620 Query 48324 CCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTTCTTGC 48383 ||||||| || || ||||||||| || || || ||||| || |||||| | || Sbjct 116619 CCCAGTCGGCTTTGCGCTTGATGCACGGTATTGTTTCTATTGCGTCGAAGAGATATGCGC 116560 Query 48384 ACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCAGAGTGCACAT 48443 | | ||| || || ||| || ||| | ||| | ||||| || || | Sbjct 116559 GTTGATTAAGATCCTTGACGTATGTATCGATAAGCAGAGAGTAAGTTTCAGAATGAACGT 116500 Query 48444 TCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGG 48503 | || || || |||||||| || ||| | |||||| | |||||||| | | Sbjct 116499 TTTCCATCATTATTTGGAACCCATAAAAGTAGCGCGCCTCAGCTGCTTGCACTTCGTTTG 116440 Query 48504 AGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGA 48563 | || | ||||| |||||| || || || || || || || || |||||||| ||||||| Sbjct 116439 AAAAGCGCTCCAACAGATTTTCGTTCACGATACCGTCAGAGGCGGCAAAGAATGCAAGGA 116380 Query 48564 CATGTTTAAGGAAATGGCGCTCGTTGTGGGTGA---GAGCATTCCAGCCCTGTACGTCTT 48620 | || | | |||||| ||||||| | | | | | | |||||| | | || | Sbjct 116379 CGTGGGTGATGAAATGACGCTCGTCATTGTTTAATCGCTCGTTCCAGTCGACAAGATCAT 116320 Query 48621 TGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACATGCCCC 48680 ||||| | |||||| |||||||| || || |||||| |||||||| || Sbjct 116319 GAGTGAGGTCAATCTCTTCCGAGGTCCAGAACGATGCTTCTGCTTTCTTGTACATCTGCC 116260 Query 48681 ATA 48683 ||| Sbjct 116259 ATA 116257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931528899206400