Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001700625.1_202016-08-08] 335 sequences; 41,818,685 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq47 185 2e-41 seq48 132 9e-26 >seq47 Length=266373 Score = 185 bits (204), Expect = 2e-41 Identities = 438/653 (67%), Gaps = 18/653 (3%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 |||||| | |||||||||||||| | ||| |||||| || |||||||| ||| | Sbjct 38482 ATATGGCAAATGTACAAGAAGGCCGAGGCCTCTTTCTGGACTGCGGAAGAGATGGATTTA 38423 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGC-AGCATTTTCTCAAGTA 25595 | || ||| | | | |||| || | || ||| ||| | | || ||| | Sbjct 38422 TCAAAAGACCTTCATGACTGGAACAACCGCCTGAATGAC-AGCGAACGATTCTTCATCTC 38364 Query 25596 C-GTGTTG--GCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652 | ||||| || |||||||| ||||||||||| || || ||||||||||| ||| | Sbjct 38363 CCGTGTTCTCGCGTTCTTTGCCGCCTCTGATGGCATTGTCAACGAGAATCTTCTCGAACG 38304 Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712 ||| | | ||||| ||| || ||||| || |||||||| |||||||| || Sbjct 38303 CTTCTCGAACGAAGTACAGGTCGCTGAGGCACGTTGCTTCTACGGGTTCCAGATTATGAT 38244 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACGT 25769 || || | ||||| ||| || | ||||| || || ||||| | |||| Sbjct 38243 GGAGAACATTCACTCCGAGACTTACTCT---CTTCTCATCGACACATACATCAAAGACCC 38187 Query 25770 CGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGC 25829 | ||| | ||| || |||| ||| |||||| || || |||||||| | ||||| Sbjct 38186 TGTCGAACGTGATTTCCTTTTTGATGCTATCGAGACTATTCCTTGCATCAAGCGCAAGGC 38127 Query 25830 GCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTT--GGCGAGCGGCTGGTA 25887 |||||| || ||||||| | || | || |||| |||||||| || ||| Sbjct 38126 CGAGTGGGCTCTGCGCTGGATCAGTGAC--GAACACTCGGTTTTCGGCGAGCGTCTCGTA 38069 Query 25888 GCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTC 25947 |||||||||||||| || ||||| || ||| || || || ||| ||||||| ||| | Sbjct 38068 GCCTTTGCTGCTGTTGAAGGCATTTTCTTCTCTGGCTCCTTCGCGTCCATCTTTTGGATG 38009 Query 25948 AAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAG 26007 ||| || || ||||| || || || || |||||||||||||| | || ||| Sbjct 38008 AAGAAGCGTGGATTAATGCCTGGCTTGGCGTTCTCAAACGAGCTCATCAGTCGTGATGAG 37949 Query 26008 GGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCT 26067 ||| | || | || || |||||||| |||| || ||||| | | | ||| | Sbjct 37948 GGTATGCATACCGACTTCGCCTGCCTTCTCTTCA---GCCACCTCCGTCGTCGTCCTCAT 37892 Query 26068 CAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTT 26120 | || ||||| | |||| |||||||| || || | |||||| | ||||| Sbjct 37891 CCTGACACCGTTGAACGTATTATCAAAGAAGCAGTCGCTATCGAGCAAGAGTT 37839 >seq48 Length=263890 Score = 132 bits (146), Expect = 9e-26 Identities = 378/568 (67%), Gaps = 15/568 (3%) Strand=Plus/Plus Query 25478 TATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTGG 25537 ||||| ||||||||||||| || || || ||||||| | ||||||||||| || Sbjct 116257 TATGGCAGATGTACAAGAAAGCAGAAGCATCGTTCTGGACCTCGGAAGAGATTGACCTCA 116316 Query 25538 CCAAGGACATGGACGGCTGGTACGCTCTATC---CAAAGACGAGCAGCATTTTCTCAAGT 25594 | | || | | || |||| ||| | || ||| ||||||| ||||| ||| Sbjct 116317 CTCATGATCTTGTCGACTGGAACGAGCGATTAAACAATGACGAGCGTCATTTCATCACCC 116376 Query 25595 ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGAT 25654 |||| | ||||||||||| |||||||| ||||| |||||||| ||||||| ||| | | Sbjct 116377 ACGTCCTTGCATTCTTTGCCGCCTCTGACGGTATCGTGAACGAAAATCTGTTGGAGCGCT 116436 Query 25655 TCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCG 25714 | | | |||||||| | ||||| | || || || ||||| || || | Sbjct 116437 TTTCAAACGAAGTGCAAGCAGCTGAGGCGCGCTACTTTTATGGGTTCCAAATAATGATGG 116496 Query 25715 AAAATGTGCACTCTGAGGTGTATGCCAAGCTTCT-GATGACGTACATTACAGA-CGTCGC 25772 |||| || || ||||| || | |||| | ||| || ||| | | || | | Sbjct 116497 AAAACGTTCATTCTGAAACTTACTCTCTGCTTATCGAT-ACATACGTCAAGGATCTTAAT 116555 Query 25773 CGA-GAG-AGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCG 25830 | | | | | || || || | || || || ||||| |||||||| | || || Sbjct 116556 CAACGCGCATAT---CTCTTCGACGCAATAGAAACAATACCGTGCATCAAGCGCAAAGCC 116612 Query 25831 CGGTGGGCCATGAAGTGGATCAACAGCCAGA-GCGCTACGTTTGGCGAGCGGCTGGTAGC 25889 |||||| | || ||||| | | | || | | || |||| ||| | |||| || Sbjct 116613 GACTGGGCCCTCAAATGGAT-ATCTGACAAACGAAGCACTTTTGCAGAGAGATTGGTGGC 116671 Query 25890 CTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAA 25949 || |||||||| ||||| |||||||| || ||||| || |||| |||||| | || Sbjct 116672 ATTCGCTGCTGTCGAGGGAATCTTTTTTTCTGGGTCGTTCGCTTCCATTTTCTGGTTAAA 116731 Query 25950 GCAGAAGGGGACCATGCCCGGGCTGTACTT-TTCCAACGAGCTCATCAGCAGGGACGAGG 26008 | || || ||||| || || |||| ||| ||||||||||||||| | || || | Sbjct 116732 GAAGCGCGGCCTGATGCCTGGCCT-AACTTATTCAAACGAGCTCATCAGCCGAGATGAAG 116790 Query 26009 GTCTCCACAGAGATTTTGCCTGCCTGCT 26036 || | || | ||||| || || || || Sbjct 116791 GTTTACATACCGATTTCGCGTGTCTCCT 116818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928840910462400