Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001700625.1_202016-08-08] 335 sequences; 41,818,685 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq47 93.3 5e-13 >seq47 Length=266373 Score = 93.3 bits (102), Expect = 5e-13 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| | ||| ||| ||| ||| ||| |||||||||||||| || | ||||||||| Sbjct 37579 GCCTTTGAGTAATCGGACACCCGCTTCTCAAAAAAGTTGGTCTTCCCTTGAAGCGAGATC 37638 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 | ||||| | ||| ||||| | || ||||| ||| | | ||||| | || Sbjct 37639 ATGTCCATAAAGTCGAAGGGGTTCGTCGAGTTGTACAACTTCTTGTTGCCGAGAGCGACG 37698 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGAT 868869 || || || ||||| || |||||||| || || ||||| | |||||||||||||| Sbjct 37699 AGTAGTCGATCGGCAACGAACTCGATATATTGACACATCAATGTCGCGTTCATGCCGAT 37757 Score = 91.5 bits (100), Expect = 2e-12 Identities = 199/293 (68%), Gaps = 5/293 (2%) Strand=Plus/Plus Query 869172 TATGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGC 869231 ||||| ||| || || |||||||| | ||||| || || | ||| ||||| | | Sbjct 37939 TATGCATACCCTCATCACGACTGATGAGCTCGTTTGAGAACGCCAAGCCAGGCATTAATC 37998 Query 869232 CGCGCTTCTTGAGCCAAAAGATGG-CGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACG 869290 | |||||||| | ||||||||||| ||| ||| ||| ||||| || ||||| || || Sbjct 37999 CACGCTTCTTCATCCAAAAGATGGACGC-GAAGGAGCCAGAGAAGAAAATGCCTTCAACA 38057 Query 869291 GCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTC 869350 || |||||| | | ||| |||||| | || ||| | || | ||||||| | Sbjct 38058 GCAGCAAAGGCTACGAGACGCTCGCCGAA--AACCGA-GTGTTCGTCACTGATCCAGCGC 38114 Query 869351 ATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGG 869410 | ||||| |||||||| | | | | || | || ||||| || ||| ||| Sbjct 38115 AGAGCCCACTCGGCCTTGCGCTTGATGCAAGGAATAGTCTCGATAGCATCAAAAAGGAAA 38174 Query 869411 TCCTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 || |||| | ||||| |||| || |||||||| || || || || ||||| Sbjct 38175 TCACGTTCGACAGGGTCTTTGATGTATGTGTCGATGAGAAGAGAGTAAGTCTC 38227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107111708331195