Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001700625.1_202016-08-08] 335 sequences; 41,818,685 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq47 127 3e-23 >seq47 Length=266373 Score = 127 bits (140), Expect = 3e-23 Identities = 227/328 (69%), Gaps = 5/328 (2%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTT-GCTAAAGCAGAGGCCGGGCATGAGGCCGCGCT 794398 ||| || || |||||||| | ||||| | || || || || ||||| | || |||| Sbjct 37946 ACCCTCATCACGACTGATGAGCTCGTTTGAGAACGCCAAG-CCAGGCATTAATCCACGCT 38004 Query 794399 TCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAA 794458 |||| | ||||||||||| ||| ||| ||||| || ||||| || || || |||| Sbjct 38005 TCTTCATCCAAAAGATGGACGCGAAGGAGCCAGAGAAGAAAATGCCTTCAACAGCAGCAA 38064 Query 794459 AGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCC 794518 || | ||||| |||||| | ||| || | || | ||||||| || |||| Sbjct 38065 AGGCTACGAGACGCTCGCCGAAAA---CCGAGTGTTCGTCACTGATCCAGCGCAGAGCCC 38121 Query 794519 ACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCT 794578 |||| ||||| | | | | || | || ||||| || ||| ||| || | Sbjct 38122 ACTCGGCCTTGCGCTTGATGCAAGGAATAGTCTCGATAGCATCAAAAAGGAAATCACGTT 38181 Query 794579 CGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTT 794638 |||| ||||| |||| ||| ||||||||||| || ||||| ||||| ||||| ||||| | Sbjct 38182 CGACAGGGTCTTTGATGTATGTGTCGATGAGAAGAGAGTAAGTCTCGGAGTGAATGTTCT 38241 Query 794639 CGATGGCGATCTGGAAGCCATAAAAGCA 794666 | || |||||||| || || ||||| Sbjct 38242 CCATCATAATCTGGAACCCGTAGAAGCA 38269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916210764522065