Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001700625.1_202016-08-08] 335 sequences; 41,818,685 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq5 185 2e-41 seq67 91.5 3e-13 >seq5 Length=946259 Score = 185 bits (204), Expect = 2e-41 Identities = 171/217 (79%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| ||||| | || ||||| |||||||| || ||||||||||| || ||| | | || Sbjct 883823 ACGGAGAACAAGATGAAGAGTCGATTCTTTTTGGATATTATAATCCGAAAGAGTGCGGCC 883882 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 |||||||| || |||||||||||||| || | |||||| || ||||| || || ||||| Sbjct 883883 ATCTTCTAGCTGCTTTCCAGCAAAGATAAGACGTTGTTGGTCAGGAGGGATACCCTCCTT 883942 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||| || |||||||| || ||||| ||||| |||||| | || || ||||| || || Sbjct 883943 ATCCTGGATCTTTGCCTTCACATTGTCAATGGTATCAGACGACTCGACCTCCAAGGTGAT 884002 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||||| || ||||| ||||| ||||| ||||||||| Sbjct 884003 GGTCTTTCCGGTCAAAGTCTTGACAAAGATCTGCATT 884039 Score = 150 bits (166), Expect = 4e-31 Identities = 155/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || ||||| |||||||| || ||||| ||||| || | | ||| || || | || Sbjct 883608 TGAAGGGTAGACTCTTTCTGAATGTTATAGTCAGAAAGCGTACGACCATCCTCCAACTGC 883667 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 |||||||||||||| | | ||||| || ||||| || ||||| || || ||||||||| Sbjct 883668 TTTCCAGCAAAGATCAAACGCTGTTGGTCGGGAGGAATGCCTTCTTTGTCCTGAATCTTT 883727 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || || ||||| || || || ||| || || ||||| | ||| |||||||| || ||| Sbjct 883728 GCCTTGACATTGTCGATAGTGTCAGAAGACTCGACTTCAAGAGTGATCGTCTTTCCGGTC 883787 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 || ||||| ||||| |||||||| Sbjct 883788 AATGTCTTCACAAAGATCTGCAT 883810 Score = 87.8 bits (96), Expect = 4e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| ||||| | || ||||||||||| ||||| || || || ||||| ||| | | ||| Sbjct 884051 ACGAAGAACAAGATGAAGAGTAGATTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGACC 884110 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTAT 82705 || || ||||| ||||| |||||||| | || |||||||| ||||| || Sbjct 884111 ATCCTCGAGTTGCTTTCCGGCAAAGATCAATCGCTGTTGATCAGGAGGAAT 884161 >seq67 Length=206472 Score = 91.5 bits (100), Expect = 3e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 |||||| |||||||| || || ||||||||||| || || |||||| ||| | | || Sbjct 157945 ACGCAGCACTAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAATCACTCAGAGTACGTCC 157886 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTC 82707 || || |||||||||||||| || || |||| |||||||| || || |||| Sbjct 157885 ATCCTCAAGTTGTTTTCCAGCGAAAATGAGTCGCTGTTGATCAGGGGGAATTC 157833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981822985813565