Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001700625.1_202016-08-08] 335 sequences; 41,818,685 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq38 107 2e-18 seq5 87.8 2e-12 >seq38 Length=308705 Score = 107 bits (118), Expect = 2e-18 Identities = 147/203 (72%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||||||||| ||||||||||| | |||| ||| | ||||| | |||||||| Sbjct 189049 GGTTGACTCTTTCTGAATATTGTAATCAGAAAGCGTGCGACCA-TCCTCCAACTGCTTGC 188991 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || ||||||| || || ||||| || || || ||||||||||| ||| || || Sbjct 188990 CAGCAAAAATGAGACGTTGTTGGTCAGGCGGAATACCTTCCTTGTCCTGGATTTTCGCCT 188931 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | |||| ||||| | | ||| || || | |||| || || || || || | Sbjct 188930 TAACATTGTCAATAGTGTCAGACGACTCAACCTCAAGAGTGATCGTCTTTCCCGTGAGTG 188871 Query 133642 TTTTTACGAAAATCTGCATGGCT 133664 | || ||||| ||||||||| || Sbjct 188870 TCTTGACGAAGATCTGCATGCCT 188848 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||||||| | |||| ||| | ||||| | ||||||||| Sbjct 189276 GTCGACTCCTTCTGGATGTTGTAATCGGAAAGCGTGCGACCA-TCCTCCAACTGCTTGCC 189218 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || ||||||| ||||||||||| || || ||||| |||||||| |||||| ||| Sbjct 189217 AGCAAAAATGAGACGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGGATCTTCGCCTT 189158 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | |||| ||||| | | ||| || || | || | || || || || || || Sbjct 189157 TACATTGTCAATGGTGTCCGACGACTCAACCTCCAGAGTAATCGTCTTTCCTGTGAGGGT 189098 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 189097 CTTGACGAAGATCTGCAT 189080 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/203 (70%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||| ||||| || ||||| || | ||| | | | || ||||||||||||| Sbjct 188821 GGTTGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTGCGTCCA-TCTTCGAGCTGCTTGC 188763 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || || || || || |||||||| ||||| ||||| || ||||| || Sbjct 188762 CGGCGAAGATTAGTCGTTGTTGATCGGGAGGAATGCCCTCCTTATCCTGTATCTTGGCCT 188703 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | || | |||||| | | ||| || || | |||| |||||||| || || | Sbjct 188702 TCACGTTGTCGATCGTGTCTGAAGACTCGACCTCCAAAGTGATCGTTTTGCCCGTGAGGG 188643 Query 133642 TTTTTACGAAAATCTGCATGGCT 133664 | || || || || |||||| || Sbjct 188642 TCTTAACAAAGATTTGCATGCCT 188620 >seq5 Length=946259 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| ||||||||||| || || || || | ||| ||| | ||||| | || Sbjct 883607 ATGAAGGGTAGACTCTTTCTGAATGTTATAGTCAGAAAGCGTACGACCA-TCCTCCAACT 883665 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 |||| || || | || | ||||| ||||||||||| |||||||| ||||| |||| Sbjct 883666 GCTTTCCAGCAAAGATCAAACGCTGTTGGTCGGGAGGAATGCCTTCTTTGTCCTGAATCT 883725 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 || ||||| | || | ||||| | | ||| || || | |||| || || |||| Sbjct 883726 TTGCCTTGACATTGTCGATAGTGTCAGAAGACTCGACTTCAAGAGTGATCGTCTTTCCGG 883785 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 ||| || || || || |||||||| Sbjct 883786 TCAATGTCTTCACAAAGATCTGCAT 883810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483418775675400