Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001700625.1_202016-08-08] 335 sequences; 41,818,685 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq5 105 4e-18 seq38 98.7 7e-16 >seq5 Length=946259 Score = 105 bits (116), Expect = 4e-18 Identities = 153/212 (72%), Gaps = 3/212 (1%) Strand=Plus/Plus Query 33540 CACCAA-ATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGT 33598 |||||| ||| || || |||||| || ||||| || || || || || || | || | Sbjct 883600 CACCAAGATGAAGGGTAGACTCTTTCTGAATGTTATAGTCAGAAAGCGTACGACCATCCT 883659 Query 33599 CCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGG 33658 |||| || ||||| ||||| ||||||||||| || || | || | ||||||||||| Sbjct 883660 CCAACTGCTTTCCAGCAAAGATCAAACGCTGTTGGTCGGGAGGAATGCCTTCTTTGTCCT 883719 Query 33659 CAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTT 33717 ||| || || | |||| ||| | ||||| || || || |||| |||||||| Sbjct 883720 GAATCTT-TGCCTTGACATTGTCGATAGTGTCAGAAGACTCGACTTCAAGAGTGATCGTC 883778 Query 33718 TTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || || || || || |||||||||||||| Sbjct 883779 TTTCCGGTCAATGTCTTCACAAAGATCTGCAT 883810 >seq38 Length=308705 Score = 98.7 bits (108), Expect = 7e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 |||||| || || |||||||| || || ||||| | || ||||| || || || ||||| Sbjct 189043 CTCTTTCTGAATATTGTAATCAGAAAGCGTGCGACCATCCTCCAACTGCTTGCCAGCAAA 188984 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 ||| | ||| || || || |||| | |||||| ||||| |||||| || ||||| Sbjct 188983 AATGAGACGTTGTTGGTCAGGCGGAATACCTTCCTTGTCCTGGATTTTCGCCTT-AACAT 188925 Query 33678 AGTCACG-GTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 |||| ||||| || || || |||| |||||||| || || || | || || | Sbjct 188924 TGTCAATAGTGTCAGACGACTCAACCTCAAGAGTGATCGTCTTTCCCGTGAGTGTCTTGA 188865 Query 33737 CAAAGATCTGCAT 33749 | ||||||||||| Sbjct 188864 CGAAGATCTGCAT 188852 Score = 98.7 bits (108), Expect = 7e-16 Identities = 152/213 (71%), Gaps = 3/213 (1%) Strand=Plus/Minus Query 33540 CACCAAA-TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGT 33598 |||||| || ||||| ||| || || |||||||||||||| || ||||| | || | Sbjct 189290 CACCAAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGAAAGCGTGCGACCATCCT 189231 Query 33599 CCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGG 33658 |||| || || || |||||||| | ||||||||| || |||| | || || ||||| Sbjct 189230 CCAACTGCTTGCCAGCAAAAATGAGACGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCT 189171 Query 33659 CAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTT 33717 || ||| | | |||| ||| | |||||| || || || || | || ||||| Sbjct 189170 GGATCTTC-GCCTTTACATTGTCAATGGTGTCCGACGACTCAACCTCCAGAGTAATCGTC 189112 Query 33718 TTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || ||||| | || || || |||||||||||| Sbjct 189111 TTTCCTGTGAGGGTCTTGACGAAGATCTGCATA 189079 Score = 82.4 bits (90), Expect = 5e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| ||||||||| ||||||||||| ||||| || ||| |||| || | ||| Sbjct 188312 TGGAGGGTGGACTCTTTTTGGATGTTGTAATCCGAGAGAGTTCGTCCGTCCTCAAGTTGC 188253 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCT 33636 ||||| || ||||||||||| || || ||| Sbjct 188252 TTTCCAGCGAAAATCAAACGTTGTTGGTCT 188223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328702657963200