Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001700625.1_202016-08-08] 335 sequences; 41,818,685 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq38 87.8 2e-12 seq5 82.4 7e-11 >seq38 Length=308705 Score = 87.8 bits (96), Expect = 2e-12 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 ||||||| || |||||||||||||| | ||| || |||||||||||| || |||| Sbjct 188819 TTGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTGCGTCCATCTTCGAGCTGCTTGCCGG 188760 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 ||||||| || |||||||| ||||| ||||| || ||||| Sbjct 188759 CGAAGATTAGTCGTTGTTGATCGGGAGGAATGCCCTCCTTATC 188717 >seq5 Length=946259 Score = 82.4 bits (90), Expect = 7e-11 Identities = 145/210 (69%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 131915 ACCAA-ATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||||| ||| | | | |||||||| |||||||| ||||| | ||||| ||| || Sbjct 883601 ACCAAGATGAAGGGTAGACTCTTTCTGAATGTTATAGTCAGAAAGCGTACGACCATCCTC 883660 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 | ||| || || | | |||| | ||||||||| || ||||| ||||||||||| || Sbjct 883661 CAACTGCTTTCCAGCAAAGATCAAACGCTGTTGGTCGGGAGGAATGCCTTCTTTGTCCTG 883720 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 ||| ||| || | | || | ||| || | | ||| ||||| | || | ||| || Sbjct 883721 AATCTTTGCCTTGACATTGTCGATAGTGTCAGAAGACTCGACTTCAAGAGTGATCGTCTT 883780 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || |||| || || | || |||||||| Sbjct 883781 TCCGGTCAATGTCTTCACAAAGATCTGCAT 883810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476609204190600