Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001700625.1_202016-08-08] 335 sequences; 41,818,685 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq47 149 9e-30 seq48 134 2e-25 >seq47 Length=266373 Score = 149 bits (164), Expect = 9e-30 Identities = 367/541 (68%), Gaps = 13/541 (2%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||||||| |||||||| || |||||||||||||| || ||||| || || ||| | || Sbjct 38483 GATATGGCAAATGTAC-AAGAAGGCCGAGGCCTCTTTCTGGACTGCGGAAGAGATGGATT 38425 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGT--CGC-TGAGCGACGACGAGCGCCATTTCATCA 1455891 | ||| ||||| ||| ||| ||| ||| || |||||| Sbjct 38424 TATCAAAAGACCTTCATGACTGGAACAACCGCCTGAATGACAGCGAACGATTCTTCATCT 38365 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 | || ||||| || ||| |||||| |||||||| || |||||| || || Sbjct 38364 CCCGTGTTCTCGCGTTCTTT-GCCGCCTCTGATGGCATTGTCAACGAGAATCTTCTCGAA 38306 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 ||||| ||| || || || | | |||||||||| || |||||||||||||| Sbjct 38305 CGCTTCTCGAACGAAGTACAGGTCGCTGAGGCACGTTGCTTCTACGGGTTCCAGATTATG 38246 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG 1456071 || || ||||| ||||| || || ||||| || || |||||||| ||| |||| ||||| Sbjct 38245 ATGGAGAACATTCACTCCGAGACTTACTCTCTTCTCATCGACACATACATCAAAGACCCT 38186 Query 1456072 GTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCC 1456131 ||||| || ||| ||| || ||||| || | || | | | | |||||| Sbjct 38185 GTCGAACGTGATTTCCTTTTTGATGCTATCGAGACTATTCCTTGCATCAAGCGCAAGGCC 38126 Query 1456132 GACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCG 1456191 || ||||| || ||||||| | || |||| || | |||||| ||||| | Sbjct 38125 GAGTGGGCTCTGCGCTGGATCAGTGACGA-ACACTCG-GTTTTCGGCGAGCGTCTCGTAG 38068 Query 1456192 GCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCG-CCATCTTTTGGCTC 1456249 |||||| || || || ||||| || ||||| ||| ||| ||| ||||||||||| | Sbjct 38067 CCTTTGCTGCTGTTGAAGGCATTTTCTTCTCTGGCTCCTTC-GCGTCCATCTTTTGGATG 38009 Query 1456250 AAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGC-AACGAATTTATCAGTCGCGACG 1456308 |||||||| || | ||||| || ||| || || | ||||| | |||||||| || | Sbjct 38008 AAGAAGCGTGGATTAATGCCTGG-CTT-GGCGTTCTCAAACGAGCTCATCAGTCGTGATG 37951 Query 1456309 A 1456309 | Sbjct 37950 A 37950 >seq48 Length=263890 Score = 134 bits (148), Expect = 2e-25 Identities = 366/550 (67%), Gaps = 23/550 (4%) Strand=Plus/Plus Query 1455777 TATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTC 1455836 ||||| | |||||| | |||| | || || || || |||||| | || ||| | |||||| Sbjct 116257 TATGGCAGATGTACAAGAAAG-CAGAAGCATCGTTCTGGACCTCGGAAGAGATTGACCTC 116315 Query 1455837 GGCGCCGACACGGTCCACTGGGTGTCGC---TGAGCGACGACGAGCGCCATTTCATCAAG 1455893 || ||| ||||| || | | | | |||||||| |||||||||| Sbjct 116316 ACTCATGATCTTGTCGACTGGAACGAGCGATTAAACAATGACGAGCGTCATTTCATCACC 116375 Query 1455894 CACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCG 1455953 |||||||| || || ||| |||||| || || |||||| ||| || ||| | || Sbjct 116376 CACGTCCTTGCATTCTTT-GCCGCCTCTGACGGTATCGTGAACGAAAATCTGTTGGAGCG 116434 Query 1455954 CTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCAT 1456013 |||| || || || ||| | ||||| || | ||||| |||||||| || || Sbjct 116435 CTTTTCAAACGAAGTGCAAGCAGCTGAGGCGCGCTACTTTTATGGGTTCCAAATAATGAT 116494 Query 1456014 CGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGT 1456073 |||||| | || |||||||| ||||| || || ||||| || ||||||||||| | | Sbjct 116495 GGAAAACGTTCATTCTGAAACTTACTCTCTGCTTATCGATACATACGTCAAGGATC--TT 116552 Query 1456074 CGAGAAGGACCACCTCT-TTCG-CGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCC 1456131 || | || ||| |||| ||| || || || | |||| | | | || ||| Sbjct 116553 AATCAACGCGCATATCTCTTCGACGCAATAGAAACAATACCGTGCATCAAGCGCAAAGCC 116612 Query 1456132 GACTGGGCGATGAAGTGGA----TCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTC 1456187 |||||||| | || |||| | | || || | || ||||| ||| | | Sbjct 116613 GACTGGGCCCTCAAATGGATATCTGACAAACGAAGCACT------TTTGCAGAGAGATTG 116666 Query 1456188 GTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGG 1456246 || | || || || |||||||| |||||||| || || ||| |||| || ||| Sbjct 116667 GTGGCATTCGCTGCTGTCGAGGGAATCTTTTTTTCTGGGTCGTTCGCTTCCATTTTCTGG 116726 Query 1456247 CTCAAGAAGCGCGGCCTCATGCCCGGTCT-TCTGCTTTAGCAACGAATTTATCAGTCGCG 1456305 | |||||||||||||| ||||| || || || || | ||||| | ||||| || | Sbjct 116727 TTAAAGAAGCGCGGCCTGATGCCTGGCCTAACTTATTCA--AACGAGCTCATCAGCCGAG 116784 Query 1456306 ACGAAGTTTT 1456315 | |||| ||| Sbjct 116785 ATGAAGGTTT 116794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177778888634270