Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001700625.1_202016-08-08] 335 sequences; 41,818,685 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq47 174 2e-38 seq48 161 1e-34 >seq47 Length=266373 Score = 174 bits (192), Expect = 2e-38 Identities = 377/562 (67%), Gaps = 14/562 (2%) Strand=Plus/Plus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||||||||| ||| | |||||||| | ||| || | ||||| || || | | Sbjct 37925 GCAGGCGAAGTCGGTATGCATACCCTCATCACGACTGATGAGCTCGTTTGAGAACGCCAA 37984 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAA 39735 |||||||||| |||||||| || | |||||| |||| || || || ||||| ||||| Sbjct 37985 GCCAGGCATTAATCCACGCTTCTTCATCCAAAAGATGGACGCGAAGGAGCCAGAGAAGAA 38044 Query 39736 GATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAA--CTTGT-ATCATTATG 39792 |||||||| || || ||||| || || || | ||| ||| || | || || | | Sbjct 38045 AATGCCTTCAACAGCAGCAAAGGCTACGAGACGCTCGCCGAAAACCGAGTGTTCGTCACT 38104 Query 39793 TATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 39852 ||||| | | ||||| || || || ||| | ||||| || || || ||||||| Sbjct 38105 GATCCAGCGCAGAGCCCACTCGGCCTTGCGCTTGATGCAAGGAATAGTCTCGATAGCATC 38164 Query 39853 AAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACAT 39912 ||| || ||| ||| || ||||| | ||||| || || | ||| || | Sbjct 38165 AAAAAGGAAATCACGTTCGACAGGGTCTTTGATGTATGTGTCGATGAGAAGAGAGTAAGT 38224 Query 39913 TTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAAT 39972 || || || ||||| || ||| ||||| || ||||| || || | ||| |||| | Sbjct 38225 CTCGGAGTGAATGTTCTCCATCATAATCTGGAACCCGTAGAAGCAACGTGCCTCAGCGAC 38284 Query 39973 TTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGC 40032 ||||| || | || | ||| | ||| || || || || |||||| ||||| Sbjct 38285 CTGTACTTCGTTCGAGAAGCGTTCGAGAAGATTCTCGTTGACAATGCCATCAGAGGCGGC 38344 Query 40033 AAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAAT-------TTAT 40085 ||| || || | ||| | || || || ||| | ||||| | || | Sbjct 38345 AAAGAACGCGAGAACACGGGAGATGAAGAATCGTTC----GCTGTCATTCAGGCGGTTGT 38400 Query 40086 TCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTG 40145 ||||||||| | |||||||||| ||| | ||||| || ||||| || || ||||| | Sbjct 38401 TCCAGTCATGAAGGTCTTTTGATAAATCCATCTCTTCCGCAGTCCAGAAAGAGGCCTCGG 38460 Query 40146 CCTTTTTGTACATGTTCCATAT 40167 |||| |||||||| | |||||| Sbjct 38461 CCTTCTTGTACATTTGCCATAT 38482 >seq48 Length=263890 Score = 161 bits (178), Expect = 1e-34 Identities = 370/556 (67%), Gaps = 6/556 (1%) Strand=Plus/Minus Query 39617 CAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGT 39676 || ||||| || ||||| || ||||||| || || | ||||| ||| | || || Sbjct 116812 CACGCGAAATCGGTATGTAAACCTTCATCTCGGCTGATGAGCTCGTTTGAATAAGTTAGG 116753 Query 39677 CCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAG 39736 |||||||| || || ||||| || | ||| || |||| ||| || || |||||||| ||| Sbjct 116752 CCAGGCATCAGGCCGCGCTTCTTTAACCAGAAAATGGAAGCGAACGACCCAGAAAAAAAG 116693 Query 39737 ATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAA---CTTGTATCATTATGT 39793 || || || || || || ||||| || | ||||||| | || ||| | | | | Sbjct 116692 ATTCCCTCGACAGCAGCGAATGCCACCAATCTCTCTGCAAAAGTGCTTCGTTTGTCAGAT 116633 Query 39794 ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 39853 ||||| || | ||||| || ||||| ||| | || || ||||||||||| || | Sbjct 116632 ATCCATTTGAGGGCCCAGTCGGCTTTGCGCTTGATGCACGGTATTGTTTCTATTGCGTCG 116573 Query 39854 AAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATT 39913 |||||||| || || | ||| || || |||||||| || | |||| || || Sbjct 116572 AAGAGATATGCGCGTTGATTAAGATCCTTGACGTATGTATCGATAAGCAGAGAGTAAGTT 116513 Query 39914 TCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATT 39973 || ||||| | |||||| ||| || || || || ||||| | | || |||| | Sbjct 116512 TCAGAATGAACGTTTTCCATCATTATTTGGAACCCATAAAAGTAGCGCGCCTCAGCTGCT 116453 Query 39974 TGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCA 40033 || || || |||| | ||| || |||||| ||||| || || ||| |||||| Sbjct 116452 TGCACTTCGTTTGAAAAGCGCTCCAACAGATTTTCGTTCACGATACCGTCAGAGGCGGCA 116393 Query 40034 AAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAAT---TTATTCCAG 40090 || ||||| | || || | || |||| || || | ||| | |||||| Sbjct 116392 AAGAATGCAAGGACGTGGGTGATGAAATGACGCTCGTCATTGTTTAATCGCTCGTTCCAG 116333 Query 40091 TCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTT 40150 || | ||| | | | || | ||||| | ||||| ||||| || ||||| || Sbjct 116332 TCGACAAGATCATGAGTGAGGTCAATCTCTTCCGAGGTCCAGAACGATGCTTCTGCTTTC 116273 Query 40151 TTGTACATGTTCCATA 40166 |||||||| | ||||| Sbjct 116272 TTGTACATCTGCCATA 116257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686905923569400