Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lentinula_20edodes_20[genbank_20GCA_5F001700625.1_202016-08-08] 335 sequences; 41,818,685 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq48 181 8e-41 seq47 147 2e-30 >seq48 Length=263890 Score = 181 bits (200), Expect = 8e-41 Identities = 381/559 (68%), Gaps = 12/559 (2%) Strand=Plus/Plus Query 43731 TATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGA 43790 ||||||| |||||||| |||||| | || || || ||||| | ||||| |||| | | Sbjct 116257 TATGGCAGATGTACAAGAAAGCAGAAGCATCGTTCTGGACCTCGGAAGAGATTGACCTCA 116316 Query 43791 CTAAAGACTTAGCACATTGGATTGC---ATTAAAACCACAAGAAAAACATTTTATATCTT 43847 || | || | | | |||| | |||||| | || ||||| || | Sbjct 116317 CTCATGATCTTGTCGACTGGAACGAGCGATTAAACAATGACGAGCGTCATTTCATCACCC 116376 Query 43848 TGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGT 43907 || | || || ||||| || ||||| || || || |||||| || | || | Sbjct 116377 ACGTCCTTGCATTCTTTGCCGCCTCTGACGGTATCGTGAACGAAAATCTGTTGGAGCGCT 116436 Query 43908 TTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAG 43967 || | | ||||| ||| | | || || || | ||||||||||| ||||| || | Sbjct 116437 TTTCAAACGAAGTGCAAGCAGCTGAGGCGCGCTACTTTTATGGGTTCCAAATAATGATGG 116496 Query 43968 AAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCA-C 44026 |||| ||||||| |||| ||| ||| || || ||||| ||| |||| ||| | | Sbjct 116497 AAAACGTTCATTCTGAAACTTACTCTCTGCTTATCGATACATACGTCAAGGATCTTAATC 116556 Query 44027 GAGAAGCATCGAT-TGTTTAATGCGATAGAAACAGTACC-TGCGATTAAACATAAAGCAG 44084 | |||| || | || | || ||||||||| |||| ||| || || | ||||| | Sbjct 116557 AACGCGCAT--ATCTCTTCGACGCAATAGAAACAATACCGTGC-ATCAAGCGCAAAGCCG 116613 Query 44085 ACTGGGCCCTTAAATGGATAAATT-CAAATGATTC--TTTTGGAGAACGACTTGTCGCGT 44141 |||||||||| ||||||||| | |||| || | ||||| ||| || | || || | Sbjct 116614 ACTGGGCCCTCAAATGGATATCTGACAAACGAAGCACTTTTGCAGAGAGATTGGTGGCAT 116673 Query 44142 TTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGA 44201 | || | ||| || || || || ||||| || ||||| || |||| || |||||||||| Sbjct 116674 TCGCTGCTGTCGAGGGAATCTTTTTTTCTGGGTCGTTCGCTTCCATTTTCTGGTTAAAGA 116733 Query 44202 AACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCT 44261 | || || |||||||||| | || | |||||| ||| | || || || |||||||| | Sbjct 116734 AGCGCGGCCTGATGCCTGGCCTAACTTATTCAAACGAGCTCATCAGCCGAGATGAAGGTT 116793 Query 44262 TACATTGCGATTTTGCTTG 44280 ||||| |||||| || || Sbjct 116794 TACATACCGATTTCGCGTG 116812 >seq47 Length=266373 Score = 147 bits (162), Expect = 2e-30 Identities = 384/579 (66%), Gaps = 29/579 (5%) Strand=Plus/Minus Query 43720 ATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGA 43779 |||| || | ||||||||||||||||| || || |||| || || ||||| || ||||| Sbjct 38491 ATAT-ATCAGATATGGCAAATGTACAAGAAGGCCGAGGCCTCTTTCTGGACTGCGGAAGA 38433 Query 43780 AGTTGATTTGACTAAAGACTTAGCACATTGGATTGCATTAAAACCACAAGAAAAACAT-- 43837 | ||||| | |||||| | ||| || || | | |||| | ||| ||| Sbjct 38432 GATGGATTTATCAAAAGACCTT---CAT--GACTGGA--ACAACCGCCTGAATGACAGCG 38380 Query 43838 --------TTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATG 43889 || || || ||| | ||||| ||||| || || || || ||||| | Sbjct 38379 AACGATTCTTCATCTCCCGTGTTCTCGCGTTCTTTGCCGCCTCTGATGGCATTGTCAACG 38320 Query 43890 AAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATG 43949 | ||| | | || || || | ||||| || | | || ||||| || || || | Sbjct 38319 AGAATCTTCTCGAACGCTTCTCGAACGAAGTACAGGTCGCTGAGGCACGTTGCTTCTACG 38260 Query 43950 GGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGT 44009 |||| || ||| || || || ||||| || || | ||| |||||| || || || | Sbjct 38259 GGTTCCAGATTATGATGGAGAACATTCACTCCGAGACTTACTCTCTTCTCATCGACACAT 38200 Query 44010 ACATCAAAGA---TGG-GCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACCT 44065 |||||||||| || | ||| || || || || |||| || || || | ||| Sbjct 38199 ACATCAAAGACCCTGTCGAACGTGATT--TCCTTT--TTGATGCTATCGAGACTATTCCT 38144 Query 44066 GCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTC---TTTT 44122 || || | || || || ||||| || ||||| | | | | || ||| Sbjct 38143 TGCATCAAGCGCAAGGCCGAGTGGGCTCTGCGCTGGATCAGTGACGAACACTCGGTTTTC 38084 Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 || || || || || || ||||| | ||| |||||||||||||| || || || || ||| Sbjct 38083 GGCGAGCGTCTCGTAGCCTTTGCTGCTGTTGAAGGCATTTTCTTCTCTGGCTCCTTCGCG 38024 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 |||| |||||| | ||||| || || || |||||||| ||| |||| ||||| ||| | Sbjct 38023 TCCATCTTTTGGATGAAGAAGCGTGGATTAATGCCTGGCTTGGCGTTCTCAAACGAGCTC 37964 Query 44243 ATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGC 44281 || ||||||||||| || | ||| ||| || || ||| Sbjct 37963 ATCAGTCGTGATGAGGGTATGCATACCGACTTCGCCTGC 37925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397454377261675